YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114620630, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQRPGPVLS AVAVLGQVAK RKVAWLPRWK AVTRTETAGN SSGVYGFGKM KIFVKYFRKM  60
   61 ADPWQECMDY AVTLARQAGE VVCEAIKNEM NVMLKSSPVD LVTATDQKVE KMLISSIKEK 120
  121 YPSHSFIGEE SVAAGEKSIL TDNPTWIIDP IDGTTNFVHR FPFVAVSIGF AVNKKIEFGV 180
  181 VYSCVEGKMY TARKGKGAFC NGQKLQVSQQ EDITKSLLVT ELGSSRTPET VRMVLSNMEK 240
  241 LFCIPVHGIR SVGTAAVNMC LVATGGADAY YEMGIHCWDV AGAGIVVTEA GGVLMDVTGG 300
  301 PFDLMSRRVI AANNRILAER IAKEIQVIPL QRDDED

Type	Start	End	Confidence
Signal Peptide	1	19	0.66
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	336	0.92