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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114620586
Protein type: Transmembrane
Type Confidence: 0.63
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVIGLLCV SADWDHGFEG KHLSEVKHRQ APELWFGGAV CWKKMADPGM MSLFGEDGNI  60
   61 FSEGLEGLGE CGYPENPVNP MGQQMPIDQG FASLQPSLHH PSTNQNQTKL THFDHYNQYE 120
  121 QQKMHLMDQP NRMMSSTPGN GLASPHSQYH TPPVPQVPHG GSGGGQMGVY PGMQNERHGQ 180
  181 SFVDSSSMWG PRAVQVPDQI RAPYQQQQPQ PQPPQPAPSG PPAQGHPQHM QQMGSYMARG 240
  241 DFSMQQHGQP QQRMSQFSQG QEGLNQGNPF IATSGPGHLS HVPQQSPSMA PSLRHSVQQF 300
  301 HHHPSTALHG ESVAHSPRFS PNPPQQGAVR PQTLNFSSRS QTVPSPTINN SGQYSRYPYS 360
  361 NLNQGLVNNT GMNQNLGLTN NTPMNQSVPR YPNAVGFPSN SGQGLMHQQP IHPSGSLNQM 420
  421 NTQTMHPSQP QGTYASPPPM SPMKAMSNPA GTPPPQVRPG SAGIPMEVGS YPNMPHPQPS 480
  481 HQPPGAMGIG QRNMGPRNMQ QSRPFIGMSS APRELTGHMR PNGCPGVGLG DPQAIQERLI 540
  541 PGQQHPGQQP SFQQLPTCPP LQPHPGLHHQ SSPPHPHHQP WAQLHPSPQN TPQKVPVHQH 600
  601 SPSEPFLEKP VPDMTQVSGP NAQLVKSDDY LPSIEQQPQQ KKKKKKNNHI VAEDPSKRFG 660
  661 KDDFPGGVDN QELNRNSLDG SQEEKKKKKR SKAKKDPKEP KEPKEKKEPK EPKTPKAPKI 720
  721 PKEPKEKKAK TATPKPKSSK KSSNKKPDSE ASALKKKVNK GKTEGSENSD LDKTPPPSPP 780
  781 PEEDEDPGVQ KRRSSRQVKR KRYTEDLEFK ISDEEADDAD AAGRDSPSNT SQSEQQESVD 840
  841 AEGPVVEKIM SSRSVKKQKE SGEEVEIEEF YVKYKNFSYL HCQWASIEDL EKDKRIQQKI 900
  901 KRFKAKQGQN KFLSEIEDEL FNPDYVEVDR IMDFARSTDD RGEPVTHYLV KWCSLPYEDS 960
  961 TWERRQDIDQ AKIEEFEKLM SREPETERVE RPPADDWKKS ESSREYKNNN KLREYQLEGV1020
 1021 NWLLFNWYNM RNCILADEMG LGKTIQSITF LYEIYLKGIH GPFLVIAPLS TIPNWEREFR1080
 1081 TWTELNVVVY HGSQASRRTI QLYEMYFKDP QGRVIKGSYK FHAIITTFEM ILTDCPELRN1140
 1141 IPWRCVVIDE AHRLKNRNCK LLEGLKMMDL EHKVLLTGTP LQNTVEELFS LLHFLEPSRF1200
 1201 PSETTFMQEF GDLKTEEQVQ KLQAILKPMM LRRLKEDVEK NLAPKEETII EVELTNIQKK1260
 1261 YYRAILEKNF TFLSKGGGQA NVPNLLNTMM ELRKCCNHPY LINGAEEKIL EEFKETHNAE1320
 1321 SPDFQLQAMI QAAGKLVLID KLLPKLKAGG HRVLIFSQMV RCLDILEDYL IQRRYPYERI1380
 1381 DGRVRGNLRQ AAIDRFSKPD SDRFVFLLCT RAGGLGINLT AADTCIIFDS DWNPQNDLQA1440
 1441 QARCHRIGQS KSVKIYRLIT RNSYEREMFD KASLKLGLDK AVLQSMSGRE NATNGVQQLS1500
 1501 KKEIEDLLRK GAYGALMDEE DEGSKFCEED IDQILLRRTH TITIESEGKG STFAKASFVA1560
 1561 SGNRTDISLD DPNFWQKWAK KAELDIDALN GRNNLVIDTP RVRKQTRLYS AVKEDELMEF1620
 1621 SDLESDSEEK PCAKPRRPQD KSQGYARSEC FRVEKNLLVY GWGRWTDILS HGRYKRQLTE1680
 1681 QDVETICRTI LVYCLNHYKG DENIKSFIWD LITPTADGQT RALVNHSGLS APVPRGRKGK1740
 1741 KVKAQSTQPV VQDADWLASC NPDALFQEDS YKKHLKHHCN KVLLRVRMLY YLRQEVIGDQ1800
 1801 ADKILEGADS SEADVWIPEP FHAEVPADWW DKEADKSLLI GVFKHGYEKY NSMRADPALC1860
 1861 FLERVGMPDA KAIAAEQRGT DMLADGGDGG EFDREDEDPE YKPTRTPFKD EIDEFANSPS1920
 1921 EDKEESMEIH ATGKHSESNA ELGQLYWPNT STLTTRLRRL ITAYQRSYKR QQMRQEALMK1980
 1981 TDRRRRRPRE EVRALEAERE AIISEKRQKW TRREEADFYR VVSTFGVIFD PVKQQFDWNQ2040
 2041 FRAFARLDKK SDESLEKYFS CFVAMCRRVC RMPVKPDDEP PDLSSIIEPI TEERASRTLY2100
 2101 RIELLRKIRE QVLHHPQLGE RLKLCQPSLD LPEWWECGRH DRDLLVGAAK HGVSRTDYHI2160
 2161 LNDPELSFLD AHKNFAQNRG AGNTSSLNPL AVGFVQTPPV ISSAHIQDER VLEQAEGKVE2220
 2221 ESENPAAKEK CEGKEEEEET DGSGKESKQE CEAEASSVKN ELKGAEVGAD TGSKSISEKG2280
 2281 SEEDEEEKLE DDDKSEESSQ PEAGAVSRGK NFDEESNASM STARDETRDG FYMEDGDPSV2340
 2341 AQLLHERTFA FSFWPKDRVM INRLDNICEA VLKGKWPVNR RQMFDFQGLI PGYTPTTVDS2400
 2401 PLQKRSFAEL SMVGQASISG SEDITTSPQL SKEDALNLSV PRQRRRRRRK IEIEAERAAK2460
 2461 RRNLMEMVAQ LRESQVVSEN GQEKVVDLSK ASREATSSTS NFSSLSSKFI LPNVSTPVSD2520
 2521 AFKTQMELLQ AGLSRTPTRH LLNGSLVDGE PPMKRRRGRR KNVEGLDLLF MSHKRTSLSA2580
 2581 EDAEVTKAFE EDIETPPTRN IPSPGQLDPD TRIPVINLED GTRLVGEDAP KNKDLVEWLK2640
 2641 LHPTYTVDMP SYVPKNADVL FSSFQKPKQK RHRCRNPNKL DINTLTGEER VPVVNKRNGK2700
 2701 KMGGAMAPPM KDLPRWLEEN PEFAVAPDWT DIVKQSGFVP ESMFDRLLTG PVVRGEGASR2760
 2761 RGRRPKSEIA RAAAAAAAVA STSGINPLLV NSLFAGMDLT SLQNLQNLQS LQLAGLMGFP2820
 2821 PGLATAATAG GDAKNPAAVL PLMLPGMAGL PNVFGLGGLL NNPLSAATGN TTTASSQGEP2880
 2881 EDSTSKGEEK GNENEDENKD SEKSTDAVSA ADSANGSVGA ATAPAGLPSN PLAFNPFLLS2940
 2941 TMAPGLFYPS MFLPPGLGGL TLPGFPALAG LQNAVGSSEE KAADKAEGGP FKDGETLEGS3000
 3001 DAEESLDKTA ESSLLEDEIA QGEELDSLDG GDEIENNEND E

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