YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114619773
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEKDAYAC FSSLGKGAGG SQIPCKQRRV LGLPAAAAAA TAAPAAAAAA AASGRGARSD  60
   61 VTAMAGIKAL ISLSFGGAIG LMFLMLGCAL PIYNKYWPLF VLFFYILSPI PYCIARRLVD 120
  121 DTDAMSNACK ELAIFLTTGI VVSAFGLPIV FARAHLIEWG ACALVLTGNT VIFATILGFF 180
  181 LVFGSNDDFS WQQW

Type	Start	End	Confidence
Cytoplasmic	1	29	0.84
Transmembrane Helix	30	52	0.85
Non-Cytoplasmic	53	64	0.69
Transmembrane Helix	65	88	0.86
Cytoplasmic	89	95	0.63
Transmembrane Helix	96	115	0.89
Non-Cytoplasmic	116	131	0.71
Transmembrane Helix	132	152	0.94
Cytoplasmic	153	160	0.65
Transmembrane Helix	161	184	0.90
Non-Cytoplasmic	185	194	0.79