YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114615095
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGAQEVLDS KLRAVRVPCS PKVPPYHKMQ TQEGPPALWS EELVAEPMQR WSLCPRLSAL  60
   61 SPKPHCRPQG SQPQPLASQA IAPSLTLFTN IPSLPRTHKA CRAQDALVQL PASFPAACHP 120
  121 TASVFGQQWA YPRASRVITP SFTPFTGTGI SAVGTGGHSR AMEALRPFGL KNVMMPSVSL 180
  181 RAGGTGRACA LAPRRRCRTE SKGRGVARSC QHPPDAGSGS PPLPLGHGDC GTVDCSVRLA 240
  241 GAVAMEAVLN ELVSVEDLLK FEKKFQSEKA AGSVSKSTQF EYAWCLVRSK YNDDIRKGIV 300
  301 LLEELLPKGS KEEQRDYVFY LAVGNYRLKE YEKALKYVRG LLQTEPQNNQ AKELERLIDK 360
  361 AMKKDGLVGM AIVGGMALGV AGLAGLIGLA VSKSKS

Type	Start	End	Confidence
Cytoplasmic	1	365	0.71
Transmembrane Helix	366	390	0.90
Non-Cytoplasmic	391	396	0.72