YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114612688
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEFKKKLF WRAVVAEFLA TTLFVFISIG SALGFKYPVG NNQTAVQDNV KVSLAFGLSI  60
   61 ATLAQSVGHI SGAHLNPAVT LGLLLSCQIS IFRALMYIIA QCVGAIVATA ILSGITSSLN 120
  121 GNSLGRNDLA DGVNSGQGLG IEIIGTLQLV LCVLATTDRR RRDLGGSAPL AIGLSVALGH 180
  181 LLAIDYTGCG INPARSFGSA VITHNFSNHW IFWVGPFIGG ALAVLIYDFI LAPRNSDLTD 240
  241 RVKVWTSGQV EEYDLDADDI NSRSFLGTKI FQFTHSLEVV EEVKERDPPA SRPSEHDGRC 300
  301 ARKSPLAPKL LTDSPAQVPG ILP

Type	Start	End	Confidence
Cytoplasmic	1	9	0.95
Transmembrane Helix	10	33	0.87
Non-Cytoplasmic	34	65	0.78
Transmembrane Helix	66	85	0.72
Cytoplasmic	86	93	0.71
Transmembrane Helix	94	116	0.89
Non-Cytoplasmic	117	137	0.86
Transmembrane Helix	138	157	0.93
Cytoplasmic	158	163	0.94
Transmembrane Helix	164	184	0.89
Non-Cytoplasmic	185	208	0.89
Transmembrane Helix	209	231	0.92
Cytoplasmic	232	323	0.99