YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114609928
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESPHKKKKI AARRKWEVFP GRNKFFCNGR IMMARQTGVF YLTLVLILVT SGLFFAFDCP  60
   61 YLAVKITPAI PAVAGILFFF VMGTLLRTSF SDPGVLPRAT PDEAADLERQ IDIANGTSSG 120
  121 GYRPPPRTKE VIINGQTVKL KYCFTCKIFR PPRASHCSLC DNCVERFDHH CPWVGNCVGK 180
  181 RNYRFFYMFI LSLSFLTVFI FAFVITHVIL RSQQTGFLNA LKDSPASVLE AVVCFFSVWS 240
  241 IVGLSGFHTY LISSNQTTNE DIKGSWSNKR GKENYNPYSY GNIFTNCCVA LCGPISPSLI 300
  301 DRRGYIQPDT PQPAAPSNGI TMYGATQSQS DMCDQDQCIQ STKFVLQAAA TPLLQSEPSL 360
  361 TSDELHLPGK PGLGTPCASL TLGPPTPPAS MPNLAEATLA DVMPRKDEHM GHQFLTPDEA 420
  421 PSPPRLLAAG SPLAHSRTMH VLGLASQDSL HEDSVRGLVK LSSV

Type	Start	End	Confidence
Cytoplasmic	1	37	0.97
Transmembrane Helix	38	57	0.95
Non-Cytoplasmic	58	65	0.73
Transmembrane Helix	66	88	0.87
Cytoplasmic	89	184	0.98
Transmembrane Helix	185	209	0.89
Non-Cytoplasmic	210	227	0.91
Transmembrane Helix	228	250	0.64
Cytoplasmic	251	464	0.61