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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114609513
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGAAVLVK GKGEAPESFM VTPHPPRTWS PCLGPEAAPE TDEWKSLCGK CIRTLGSTPC  60
   61 GSFCKLHGDT FFFRGKKKAA RSSRGQSGAH QPRGAHQVPG LMPRVSARDP QHGKRERRRR 120
  121 REILVRTVSC SFPSLQRPLD FPSSTRRGSL RAAGARASSA AVAVATRLKG TEAGSTQGRC 180
  181 RATGTRSPRA LPPGERSLRG AHTWMRLRSP RLLAPSFSRL RSPRPRRGDR TDPREGVLRR 240
  241 SPWRQSKSIR LSLDCLIFSY WFVVEPAGAG PRAVLGSCKE RGWRPCSSTR GLGWAGSSAG 300
  301 AWLGSGDERA TWGSSGLPMP PPEPGRAGRC AAPRGLHFSP LGLHRTATGV ICIFFFFFFP 360
  361 RAETGSRRRE SGRGAGRRRG RGSAPRGLGR PRGAGPRRFP EAPGSPEGRR LGGAGALNLP 420
  421 QGKRNPTAGS EPFLARASVN SAGIILTSIY SSDEDDEDFE MCDHDYDGLL PKSGKRHLGK 480
  481 TRWTREEDEK LKKLVEQNGT DDWKVIANYL PNRTDVQCQH RWQKVLNPEL IKGPWTKEED 540
  541 QRVIELVQKY GPKRWSVIAK HLKGRIGKQC RERWHNHLNP EVKKTSWTEE EDRIIYQAHK 600
  601 RLGNRWAEIA KLLPGRTDNA IKNHWNSTMR RKVEQEGYLQ ESSKASQPAA ATSFQKNSHL 660
  661 MGFAQAPPTA QLPATGQPTV NNDYSYYHIS EAQNVSSHVP YPVALHVNIV NVPQPAAAAI 720
  721 QRHYNDEDPE KEKRIKELEL LLMSTENELK GQQVLPTQNH TCSYPGWHST TIADHTRPHG 780
  781 DSAPVSCLGE HHSTPSLPAD PGSLPEESAS PARCMIVHQG TILDNVKNLL EFAETLQFID 840
  841 SDSSSWCDLS SFEFFEEADF SPSQHHTGKA LQLQQREGNG TKPAGEPSPR VNKRMLSESS 900
  901 LDPPKVLPPA RHSTIPLVIL RKKRGQASPL ATGDSSSFIF ADVSSSTPKR SPVKSLPFSP 960
  961 SQFLNTSSNH ENSDLEMPSL TSTPLIGHKL TVTTPFHRDQ TVKTQKENTV FRTPAIKRSI1020
 1021 LESSPRTPTP FKHALAAQEI KYGPLKMLPQ TPSHLVEDLQ DVIKQESDES GIVAEFQENG1080
 1081 PPLLKKIKQE VESPTDKSGN FFCSHHWEGD SLNTQLFTQT SPVADAPNIL TSSVLMAPAS1140
 1141 EDEDNVLKAF TVPKNRSLAS PLQPCSSTWE PASCGKMEEQ MTASSQARKY VNAFSARTLV1200
 1201 M

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle