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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114609263
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.75
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTAAAALP AFVALLLLSP WPLLGSAQGQ FSAGGCTFDD GPGACDYHQD LYDDFEWVHV  60
   61 SAQEPHYLPP EMPQGSYMIV DSSDHDPGEK ARLQLPTMKE NDTHCIDFSY LLYSQKGLNP 120
  121 GTLNILVRVN KGPLANPIWN VTGFTGRDWL RAELAVSTFW PNEYQVIFEA EVSGGRSGYI 180
  181 AIDDIQVLSY PCDKSPHFLR LGDVEVNAGQ NATFQCIATG RDAVHNKLWL QRRNGEDIPV 240
  241 AQTKNINHRR FAASFRLQEV TKTDQDLYRC VTQSERGSGV SNFAQLIVRE PPRPIAPPQL 300
  301 LGVGPTYLLI QLNANSIIGD GPIILKEVEY RMTSGSWTET HAVNAPTYKL WHLDPDTEYE 360
  361 IRVLLTRPGE GGTGLPGPPL ITRTKCAEPM RTPKTLKIAE IQARRIAVDW ESLGYNITRC 420
  421 HTFNVTICYH YFRGHNESKA DCLDMDPKAP QHVVNHLPPY TNVSLKMILT NPEGRKESEE 480
  481 TIIQTDEDVP GPVPVKSLQG TSFENKIFLN WKEPLDPNGI ITQYEISYSS IRSFDPAVPV 540
  541 AGPPQTVSNL WNSTHHVFMH LHPGTTYQFF IRASTVKGFG PATAINVTTN ISAPTLPDYE 600
  601 GVDASLNETA TTITVLLRPA QAKGAPISAY QIVVEELHPH RTKREAGAME CYQVPVTYQN 660
  661 AMSGGAPYYF AAELPPGNLP EPAPFTVGDN RTYQGFWNPP LAPRKGYNIY FQAMSSVEKE 720
  721 TKTQCVRIAT KANMGSRRTS EKTRLSLEGT AATEEPEVIP DPAKQTDRVV KIAGISAGIL 780
  781 VFILLLLVVI LIVKKRRSYY SYSYYLKLAK KRKDAMGNTR QEMTHMVNAM DRSYADQSTL 840
  841 HAEDPLSITF MDQHNFTESS RLLDVPRYLC EGTESPYQTG QLHPAIRVAD LLQHINLMKT 900
  901 SDSYGFKEEY ESFFEGQSAS WDVAKKDQNR AKNRYGNIIA YDHSRVILQP VEDDPSSDYI 960
  961 NANYIDGYQR PSHYIATQGP VHETVYDFWR MIWQEQSACI VMVTNLVEVG RVKCYKYWPD1020
 1021 DTEVYGDFKV TCVEMEPLAE YVVRTFTLER RGYNEIREVK QFHFTGWPDH GVPYHATGLL1080
 1081 SFIRRVKLSN PPSAGPIVVH CSAGAGRTGC YIVIDIMLDM AEREGVVDIY NCVKALRSRR1140
 1141 INMVQTEEQY IFIHDAILEA CLCGETAIPV CEFKAAYFDM IRIDSQTNSS HLKDEFQTLN1200
 1201 SVTPRLQAED CSIACLPRNH DKNRFMDMLP PDRCLPFLIT IDGESSNYIN AALMDSYRQP1260
 1261 AAFIVTQYPL PNTVKDFWRL VYDYGCTSIV MLNEVDLSQG CPQYWPEEGM LRYGPIQVEC1320
 1321 MSCSMDCDVI NRIFRICNLT RPQEGYLMVQ QFQYLGWASH REVPGSKRSF LKLILQVEKW1380
 1381 QEECEEGEGR TIIHCLNGGG RSGMFCAIGI VVEMVKRQNV VDVFHAVKTL RNSKPNMVEA1440
 1441 PEQYRFCYDV ALEYLESS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle