YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114607848
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFCHPNAAT DSCHAWQLST ASDSGIYNHE SSIVPRLAPG PHDIIALDSS FGSRLAGRAI  60
   61 VTSRSAHVLI VDSRRLPLPI AAGPSHRCLL LHPPLRRLPP ALPPPPPPCC CSKLLPPLGL 120
  121 KGFQMEHFDA SLSTYFKALL GPRDTRVKGW FLLDNYIPTF ICSVIYLLIV WLGPKYMRNK 180
  181 QPFSCRGILV VYNLGLTLLS LYMFCELVTG VWEGKYNFFC QGTRTAGESD MKIIRVLWWY 240
  241 YFSKLIEFMD TFFFILRKNN HQITVLHVYH HASMLNIWWF VMNWVPCGHS YFGATLNSFI 300
  301 HVLMYSYYGL SSVPSMRPYL WWKKYITQGQ LLQFVLTIIQ TSCGVIWPCT FPLGWLYFQI 360
  361 GYMISLIALF TNFYIQTYNK KGASRRKDHL KDHQNGSMAA VNGHTNSFSP LENNVKPRKL 420
  421 RKD

Type	Start	End	Confidence
Non-Cytoplasmic	1	151	0.59
Transmembrane Helix	152	173	0.84
Cytoplasmic	174	187	0.54
Transmembrane Helix	188	209	0.83
Non-Cytoplasmic	210	236	0.66
Transmembrane Helix	237	256	0.60
Cytoplasmic	257	262	0.69
Transmembrane Helix	263	282	0.63
Non-Cytoplasmic	283	288	0.65
Transmembrane Helix	289	310	0.81
Cytoplasmic	311	329	0.77
Transmembrane Helix	330	350	0.91
Non-Cytoplasmic	351	355	0.79
Transmembrane Helix	356	377	0.90
Cytoplasmic	378	423	0.98