YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114607582
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	267	0.96
Transmembrane Helix	268	288	0.92
Non-Cytoplasmic	289	332	0.93
Transmembrane Helix	333	353	0.93
Cytoplasmic	354	364	0.79
Transmembrane Helix	365	385	0.93
Non-Cytoplasmic	386	396	0.75
Transmembrane Helix	397	423	0.79
Cytoplasmic	424	430	0.77
Transmembrane Helix	431	453	0.88
Non-Cytoplasmic	454	459	0.85
Transmembrane Helix	460	481	0.94
Cytoplasmic	482	543	0.95
Transmembrane Helix	544	565	0.91
Non-Cytoplasmic	566	581	0.85
Transmembrane Helix	582	599	0.90
Cytoplasmic	600	614	0.78
Transmembrane Helix	615	635	0.86
Non-Cytoplasmic	636	649	0.77
Transmembrane Helix	650	672	0.92
Cytoplasmic	673	684	0.84
Transmembrane Helix	685	707	0.91
Non-Cytoplasmic	708	711	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSAWVETC RRGGKNVSGW PWASGEWTTK ADPRGHLVPA HSPHLHRNAE EIHSSFSVPA  60
   61 LEKMSGAGKG GGVELMEVEV GQAFLTWQIQ PETDSEQQFC PVRAAADCQR HSPDAGEASR 120
  121 MDRLERRERL GPQNRLRSSG RALGSPVAAS LPPGGPHRSG PARAALSSCG YGPSPEMRRE 180
  181 RTRGPQAWEF PSPTKSGCSL QSLSRDLREL REGEKPEDQA ETEESWQGLA RKTPGKACAP 240
  241 EGGSCQPGKT ENTITMTTSH QPQDRYKAVW LIFFMLGLGT LLPWNFFMTA TQYFTNRLDM 300
  301 SQNVSLVTAE LSKDAQASAA PAAPLPERNS LSAIFNNVMT LCAMLPLLLF TYLNSFLHQR 360
  361 IPQSVRILGS LVAILLVFLI TAILVKVQLD ALPFFVITMI KIVLINSFGA ILQGSLFGLA 420
  421 GLLPASYTAP IMSGQGLAGF FASVAMICAI ASGSELSESA FGYFITACAV IILTIICYLG 480
  481 LPRLEFYRYY QQLKLEGPGE QETKLDLISK GEEPRAGKEE SGVSVSNSQP TSESHSIKAI 540
  541 LKNISVLAFS VCFIFTITIG MFPAVTVEVK SSIAGSSTWE RYFIPVSCFL TFNIFDWLGR 600
  601 SLTAVFMWPG KDSRWLPSLV LARLVFVPLL LLCNIKPRRY LTVVFEHDAW FIFFMAAFAF 660
  661 SNGYLASLCM CFGPKKVKPA EAETAGAIMA FFLCLGLALG AVFSFLFRAI V