YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLC1A7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.76
Transmembrane Helix	18	39	0.92
Cytoplasmic	40	59	0.73
Transmembrane Helix	60	80	0.90
Non-Cytoplasmic	81	93	0.69
Transmembrane Helix	94	114	0.92
Cytoplasmic	115	218	0.82
Transmembrane Helix	219	239	0.87
Non-Cytoplasmic	240	259	0.79
Transmembrane Helix	260	281	0.88
Cytoplasmic	282	292	0.83
Transmembrane Helix	293	317	0.88
Non-Cytoplasmic	318	330	0.70
Transmembrane Helix	331	352	0.87
Cytoplasmic	353	367	0.75
Transmembrane Helix	368	392	0.70
Non-Cytoplasmic	393	404	0.67
Transmembrane Helix	405	439	0.65
Cytoplasmic	440	560	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPHTILARG RDVCRRNGLL ILSVLSVIVG CLLGFFLRTR RLSPQEISYF QFPGELLMRM  60
   61 LKMMILPLVF SSLMSGLASL DAKTSSRLGV LTVAYYLWTT FMAVIVGIFM VSIIHPGSAA 120
  121 QKETTEQSGK PIMSSADALL DLIRNMFPAN LVEATFKQYR TKTTPVVKSP KVAPEEAPPR 180
  181 RILIYGVQEE NGSHVQNFAL DLTPPPEVVY KSEPGTSDGM NVLGIVFFSA TMGIMLGRMG 240
  241 DSGGPLVSFC QCLNESVMKI VAVAVWYFPF GIVFLIAGKI LEMDDPRAVG KKLGFYSVTV 300
  301 VCGLVLHGLF ILPLLYFFIT KKNPIVFIRG ILQALLIALA TSSSSATLPI TFKCLLENNH 360
  361 IDRRIARFVL PVGATINMDG TALYEAVAAI FIAQVNNYEL DFGQIITISI TGTAASIGAA 420
  421 GIPQAGLVTM VIVLTSVGLP TDDITLIIGV DWALDRFRTM INVLGDALAA GIMAHICRKD 480
  481 FARDTGTEKL LPCETKPVSL QEIVAAQQNG CVKSVAEASE LTLGPTCPHH VPVQVERDEE 540
  541 LPAASLNHCT IQISELETNV