YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114605867
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCEVRRTSGK KAKRPGKCGR GEAVREKNVE DCMKLPPTTK SEMRGDAQKI RLSRGHHGLG  60
   61 GSRQLKPEGL QRLGGQEQAE RRWDNEILQQ IGAHRPTPFQ WVEVKAERRP SHRRAHLGSA 120
  121 GLASLPHRAC AGGNGPPANG STGLSGSGAT RLRTRAGTHR RKWPAGAGVE SAFREATAAV 180
  181 ESAGVGEEEE EEEDLTQQAK DIQNITVQET NKNNSESIEC SKITMDLKFN NSRKYISITV 240
  241 PSKTQTMSPH IKSVDDVVVL GMNLSKFNKL TQFFICVAGV FVFYLIYGYL QELIFSVEGF 300
  301 KSYGWYLTLV QFAFYSIFGL IELQLIQDKR RRIPGKTYMI IAFLTVGTMG LSNTSLGYLN 360
  361 YPTQVIFKCC KLIPVMLGGV FIQGKRYNVA DVSAAICMSL GLIWFTLADS TIAPNFNLTG 420
  421 VVLISLALCA DAVIGNVQEK AMKLHNASNS EMVLYSYSIG FVYILLGLTC TSGLGPAVTF 480
  481 CAKNPVRTYG YAFLFSLTGY FGISFVLALI KIFGALIAVT VTTGRKAMTI VLSFIFFAKP 540
  541 FTFQYVWSGL LVVLGIFLNV YSKNMDKIRL PSLYDLINKS VEARKSRTLA QTV

Type	Start	End	Confidence
Cytoplasmic	1	269	0.99
Transmembrane Helix	270	290	0.92
Non-Cytoplasmic	291	302	0.90
Transmembrane Helix	303	326	0.86
Cytoplasmic	327	336	0.87
Transmembrane Helix	337	357	0.90
Non-Cytoplasmic	358	386	0.53
Transmembrane Helix	387	408	0.86
Cytoplasmic	409	415	0.37
Transmembrane Helix	416	435	0.86
Non-Cytoplasmic	436	453	0.50
Transmembrane Helix	454	481	0.80
Cytoplasmic	482	488	0.48
Transmembrane Helix	489	521	0.73
Non-Cytoplasmic	522	540	0.53
Transmembrane Helix	541	562	0.86
Cytoplasmic	563	593	0.82