YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114603678, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVELGVLVV RPRPGTGLGR VMRTLLLLLL WLATRGSALY FHIGETEKKC FIEEIPDETM  60
   61 VIGNYRTQLY DKQREEYQPA TPGLGMFVEV KDPEDKVILA RQYGSEGRFT FTSHTPGEHQ 120
  121 ICLHSNSTKF SLFAGGMLRV HLDIQVGEHA NDYAEIAAKD KLSELQLRVR QLVEQVEQIQ 180
  181 KEQNYQRWRE ERFRQTSEST NQRVLWWSIL QTLILVAIGV WQMRHLKSFF EAKKLV

Type	Start	End	Confidence
Signal Peptide	1	38	0.91
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	203	0.99
Transmembrane Helix	204	223	0.93
Cytoplasmic	224	236	0.89