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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114595959
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.59
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLAPDRATG RPWLPLHTLS VSQLLRVFWL LSLLPGQAWV HGAEPRQVFQ VLEEQPPGTL  60
   61 VGTIQTRPGF TYRLSESHAL FAINSSTGAL YTTSTIDRES LPSDVINLVV LSSAPTYPTE 120
  121 VRVLVRDLND NAPVFPDPSI VVTFKEDSSS GRQVILDTAT DSDIGSNGVD HRSYRIIRGN 180
  181 EAGRFRLDIT LNPSGEGAFL HLVSKGGLDR EVTPQYQLLV EVEDKGEPKR RGYLQVNVTV 240
  241 QDINDNPPVF GSSHYQAGVP EDAVVGSSVL QVAAADADEG TNADIRYRLQ DEGTPFQMDP 300
  301 ETGLITVREP LDFEARRQYS LTVQAMDRGV PSLTGRAEAL IQLLDVNDND PVVKFRYFPA 360
  361 TSRYASVDEN AQVGTVVALL TVTDADSPAA NGNISVQILG GNEQRHFEVQ SSKVPNLSLI 420
  421 KVASALDRER IPSYNLTVSV SDNYGAPPGA AVQTRSSVAS LVIFVNDIND HPPVFSQQVY 480
  481 RVNLSEEAPP GSYVSGISAT DGDSGLNANL RYSIVSGNGL GWFHISEHSG LVTTGSSGGL 540
  541 DRELASQIVL NISARDQGVH PKVSYAQLVV TLLDVNDEKP VFSQPEGYDV SVVENAPTGT 600
  601 ELLMLRATDG DLGDNGTVRF SLQEAETDRR SFRLDPVSGR LSTISSLDRE EQAFYSLLVL 660
  661 ATDLGSPPQS SMARINVSLL DINDNSPVFY PVQYFAHIKE NEPGGSYITT VSATDPDLGT 720
  721 NGTVKYSISA GDRSRFQVNA QSGVISTRMA LDREEKTAYQ LQIVATDGGN LQSPNQAIVT 780
  781 ITVLDTQDNP PVFSQVAYSF VVFENVALGY HVGSVSASTM DLNSNISYLI TTGDQKGMFA 840
  841 INQVTGQLTT ANVIDREEQS FYQLKVVASG GTVTGDTMVN ITVKDLNDNS PHFLQAIESV 900
  901 NVVENWQAGH SIFQAKAVDP DEGVNGMVLY SLKQNPKNLF TINEKNGTIS LLGPLDVHAG 960
  961 SYQIEILASD MGVPQLSSSV ILTVYVHDVN DNSPVFDQLS YEVTLSESEP VNSRFFKVQA1020
 1021 SDKDSGANGE IAYTIAEGNT GDAFGIFPDG QLYIKSELDR ELQDRYVLMV VASDRAVEPL1080
 1081 SATVNVTVIL EDVNDNRPLF NSTNYTFYFE EEQRAGSFVG KVSAVDKDFG PNGEVRYSFE1140
 1141 MVQPDFELHA ISGEITNTHQ FDRESLMRQR GTAVFSFTVV ATDQGLPQPL KDQATVHVYM1200
 1201 KDINDNAPKF LKDFYQATIS ESAANLTQVL RVSASDVDEG NNGLIHYSIV KGNEERQFAI1260
 1261 DSTSGQVALI GKLDYEATPA YSLVIQAVDS GTIPLNSTCT LNIDILDEND NTPSFPKSTL1320
 1321 FVDVLENMRI GELVSSVTAT DSDSGDNADL YYSITGTNNH GTFSISPNTG SIFLAKKLDF1380
 1381 ETQSLYKLNI TAKDQGRPPR SSTMSVVIHV RDFNDNPPSF PPGDIFKSIV ENIPIGTSVI1440
 1441 SVTAHDPDAD INGQLSYTII QQMPRGNHFT IDEVKGTIYT NAEIDREFAN LFELTVKAND1500
 1501 QAVPIETRRY ALKNVTILVT DLNDNVPMFI SQNALAADPS AVIGSVLTTI MAADPDEGAN1560
 1561 GEIEYEIING DTDTFIVDRY SGDLRVASAL VPSQLIYNLI VSATDLGPER RKSTTELTII1620
 1621 LQGLDGPVFT QPKYITILKE GEPIGTNVIS IEAASPRGSE APVEYYIVSV RCEEKTVGRL1680
 1681 FTIGRHTGII QTAAILDREQ GACLYLVDVY AIEKSTAFPR TQRAEVEITL QDINDNPPVF1740
 1741 PTDMLDLTVE ENIGDGSKIM QLTAMDADEG ANALVTYTII SGADDSFRID PESGDLIATR1800
 1801 RLDRERRSKY SLLVRADDGL QSSDMRINIT VSDVNDHTPK FSRPVYSFDI PEDTIPGSLV1860
 1861 AAILATDDDS GVNGEITYIV NEDDEDGIFF LNPITGVFNL TRLLDYEVQQ YYILTVRAED1920
 1921 GGGQFTTIRV YFNILDVNDN PPIFSLNSYS TSLMENLPVG STVLVFNVTD ADDGINSQLT1980
 1981 YSIASGDSLG QFTVDKNGVL KVLKALDRES QSFYNLVVQV HDLPQIPASR FTSTAQVSII2040
 2041 LLDVNDNPPT FLSPKLTYIP ENTPIDTVVF KAQATDPDSG PNSYIEYTLL NPLGNKFSIG2100
 2101 TIDGEVRLTG ELDREEVSNY TLTVVATDKG QPSLSSSTEV VVVVLDINDN NPIFAQALYK2160
 2161 VEINENTLTG TDIIQVFAAD GDEGTNGQVR YGIVNGNTNQ EFRIDSVTGA ITVAKPLDRE2220
 2221 KTPTYHLTVQ ATDRGSTPRT DTSTVSIVLL DINDFVPVFE LSPYSVNVPE NLGTLPRTIL2280
 2281 QVVARDDDQG SNSKLSYVLF GGNEDNAFTL SASGELGVTQ SLDRETKERF VLMITATDSG2340
 2341 SPALTGTGTI NVIVDDVNDN VPTFASKAYF TTIPEDAPTG TDVLLVNASD ADASTNAVIS2400
 2401 YRIIGGNSQF TINPSTGQII TSALLDRETK DNYTLVVVCS DAGSPEPLSS STSVLVTVTD2460
 2461 VNDNPPRFQH HPYVTHIPSP TLPGSFVFAV TVTDADIGPN SELHYSLSGR NSEKFHIDPL2520
 2521 RGAIMAAGPL NGASEVTFSV HVKDGGSFPK TDSTTVTVRF VNKADFPKVR AKEQTFMFPE2580
 2581 NQPVSSLVTT ITGSSLRGEP MSYYIASGNL GNTFQIDQLT GQVSISQPLD FEKIQKYVVW2640
 2641 IEARDGGFPP FSSYEKLDIT VLDVNDNAPI FKEDPFISEI LENLSPRKIL TVSAMDKDSG2700
 2701 PNGQLDYEIV NGNMENSFSI NHATGEIRSV RPLDREKVSH YVLTIKSSDK GSPSQSTSVK2760
 2761 VMINILDEND NAPRFSQIFS AHVPENSSLG YTVTRVTTSD EDVGINAISR YSIMDASLPF2820
 2821 TINPSTGDIV ISRPLNREDT DRYRIRVSAH DSGWTVSTDV TIFVTDINDN APRFSRTSYY2880
 2881 LDCPELTEIG SKVAQVFATD PDEGSNGQVF YFIKSQSEYF RINATTGEIF NKQILKYQNV2940
 2941 TGFSNVNINR HSFIVTSSDR GKPSLISETT VTINIVDSND NAPQFLKSKY FTPVTKNVKV3000
 3001 GTKLIRVTAI DDKDFGLNSE VEYFISNDNH LGKFKLDNDT GWISVASSLI SDLNQNYFIT3060
 3061 VTAKDKGNPP LSSQATVHIT VTEENYHTPE FSQSHMSATI PESHSVGSIV RTVSARDRDA3120
 3121 AMNGLIKYSI SSGNEEGIFA INSSTGILTL AKALDYELCQ KHEMTISAID GGWVARTGYC3180
 3181 SVTVNVIDVN DNSPVFLSDD YFPTVLENAP SGTTVIHLNA TDADSGTNAV IAYTVQSSDS3240
 3241 DLFVIDPNTG VITTQGFLDF ETKQSYHLTV KAFNVPDEER CSFATVNVQL KGTNEYVPRF3300
 3301 VSKLYYFEIS EAAPKGTIVG EVFASDRDLG TDGEVHYLIF GNSRKKGFQI NKKTGQIYVS3360
 3361 GILDREKEER VSLKVLAKNF GSIRGADIDE VTVNVTVLDA NDPPVFTLNV YSVQISEGVP3420
 3421 IGTHVTFVSA FDSDSIPSWS RFSYFIGSGN ENGAFSINPQ TGQITVTAEL DRETLPIYNL3480
 3481 SVLAVDSGTP SATGSASLLV TLEDINDNGP MLTVSEGEVM ENKRPGTLVM TLQSTDPDLP3540
 3541 PNQGPFTYYL LSTGPATSYF SLSTAGVLST TREIDREQIA DFYLSVVTKD SGVPQMSSTG3600
 3601 TVHITVIDQN DNPSQSRTVE IFVNYYGNLF PGGILGSVKP QDPDVLDSFH CSLTSGVTSL3660
 3661 FSIPGGTCDL NSQPRSTDGT FDLTVLSNDG VHSTVTSNIR VFFAGFSNAT VDNSILLRLG3720
 3721 VSTVKDFLTN HYLHFLRIAS SQLTGLGTAV QLYSAYEENN RTFLLAAVKR NHNQYVNPSG3780
 3781 VATFFESIKE ILLRQSGVKV ESVDHDSCVH GPCQNGGSCL RRLAVSSVLK SRESLPVIIV3840
 3841 ANEPLQPFLC KCLPGYAGSW CEIDIDECLP SPCHNGGTCH NLVGGFSCSC PDGFTGRACE3900
 3901 RDINECLQSP CKNGAVCQNF PGSFNCVCKT GYTGKMCESS VNYCECNPCF NGGSCHSGVD3960
 3961 SYYCHCPFGV FGKHCELNSY GFEELSYMEF PSLDPNNNYI YVKFATIKSH ALLLYNYDNQ4020
 4021 TGDRAEFLAL EIAEERLRFS YNLGSGTYKL TTMKKVSDGH FHTVIARRAG MAASLTVDSC4080
 4081 SENQEPGYCT VSNVAVSDDW TLDVQPNRVT VGGIRSLEPV LQRRGHVESH DFVGCIMEFA4140
 4141 VNGRPLEPSQ ALAAQGILDQ CPRLEGACTR SPCQHGGTCM DYWSWQQCHC KEGLTGKYCE4200
 4201 KSVTPDTALS LEGKGRLDYH MSQNEKREYL LRQSLRGAML EPFGVNSLEV KFRTRSENGV4260
 4261 LIHIQESSNY TTVKIKNGKV HFTSDAGIAG KVERNIPEVY VADGHWHTFL IGKNGTATVL4320
 4321 SVDRIYNRDI IHPTQDFGGL DVLTISLGGI PPNQAHRDAQ TGFDGCIASM WYGGESLPFS4380
 4381 GKHSLASISK TDPSVKIGCR GPNICASNPC WGDLLCINQW YAYRCVPPGD CASHPCQNGG4440
 4441 SCEPGLHSGF TCSCPDSHTG RTCEMVVACL GVLCPQGKVC KAGSPAGHVC VLSQGPEEIS4500
 4501 LPLWAVPAIV GSCATVLALL VLSLILCNQC RGKKAKNPKE EKKPKEKKKK GSENVAFDDP4560
 4561 DNIPPYGDDM TVRKQPEGNP KPDIIERENP YLIYDETDIP HNSETIPSAP LASPEQEIEH4620
 4621 YDIDNASSIA PSDADIIQHY KQFRSHTPKF SIQRHSPLGF ARQSPMPLGA SSLTYQPSYG4680
 4681 QGLRTSSLSH SACPTPNPLS RHSPAPFSKS STFYRNSPAR ELHLPIRDGN TLEMHGDTCQ4740
 4741 PGIFNYATRL GRRSKSPQAM ASHGSRPGSR LKQPIGQIPL ESSPPVGLSI EEVERLNTPR4800
 4801 PRNPSICSAD HGRSSSEEDC RRPLSRTRNP ADGIPAPESS SDSDSHESFT CSEMEYDREK4860
 4861 PMVYTSRMPK LSQVNESDAD DEDNYGARLK PRRYHGRRAE GGPVGTQAAA PGTADNTLPM4920
 4921 KLGQQAGTFN WDNLLNWGPG FGHYVDVFKD LASLPEKAAA NEEGKAGTTK PVPKDGEAEQ4980
 4981 YV

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