YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114599207
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPYFPRKEL RCEQHLKPWL VLSGQGCTRQ SLPAQCGRWT KTQPRGRWGS RVRSADLATK  60
   61 SFPRGVKRRG RSGVKGGAGD WTRPRAPEES LRLRLRTWRR RTARKAETLA AEAEADWVSP 120
  121 KLRLGHELTR DSGGGGPFGH LLAECSLLTG TDFNIMAGRH QNRSFPLPGV QSSGQVHAFG 180
  181 NCSDTDILEE DAEVYELRSR GKEKVRRSTS RDRLDDIIVL TKDIQEGDTL NAIALQYCCT 240
  241 VADIKRVNNL ISDQDFFALR SIKIPVKKFS SLTETLCPPK GRQTSRHSSV QYSSEQQEIL 300
  301 PANDSLAYSD SAGSFLKEVD RDIEQIVKCT DNKRENLNEV VSALTAQQIR FEPDNKNTQR 360
  361 KDPYYGADWG IGWWTAVVIM LIVGIITPVF YLLYYEILAK VDVSHHSTVD SSHLHSKITP 420
  421 PSQQREMENG IVPTKGIHFS QQDDHKLYSQ DSQSPAAQQE T

Type	Start	End	Confidence
Non-Cytoplasmic	1	369	0.64
Transmembrane Helix	370	394	0.84
Cytoplasmic	395	461	0.58