YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114599033
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.93
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	430	0.95
Transmembrane Helix	431	460	0.62
Cytoplasmic	461	466	0.47
Transmembrane Helix	467	484	0.68
Non-Cytoplasmic	485	493	0.69
Transmembrane Helix	494	516	0.85
Cytoplasmic	517	642	0.98
Transmembrane Helix	643	665	0.89
Non-Cytoplasmic	666	685	0.92
Transmembrane Helix	686	708	0.89
Cytoplasmic	709	722	0.77
Transmembrane Helix	723	745	0.87
Non-Cytoplasmic	746	773	0.95
Transmembrane Helix	774	795	0.94
Cytoplasmic	796	832	0.94
Transmembrane Helix	833	852	0.97
Non-Cytoplasmic	853	872	0.88
Transmembrane Helix	873	893	0.86
Cytoplasmic	894	985	0.95
Transmembrane Helix	986	1010	0.94
Non-Cytoplasmic	1011	1027	0.91
Transmembrane Helix	1028	1052	0.87
Cytoplasmic	1053	1072	0.86
Transmembrane Helix	1073	1096	0.88
Non-Cytoplasmic	1097	1117	0.91
Transmembrane Helix	1118	1138	0.92
Cytoplasmic	1139	1158	0.93
Transmembrane Helix	1159	1181	0.87
Non-Cytoplasmic	1182	1201	0.78
Transmembrane Helix	1202	1220	0.96
Cytoplasmic	1221	1263	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKKLTRDT KGALSSFLHA LSARAPQPSW EPPKPSIFEL RIRSIAGDLP SGFGSPRSLP  60
   61 TLGRGGVGRR GRRQKDRRRP GPRGHLGLRP GWARCSPRTT GDGECRGGKR DPRIQGAESA 120
  121 ECALTPPGRE PAQNERARTQ RGCPGLLGGA GRGQGERGNC GRPDGGGNRL HRGDSTTALG 180
  181 ACGSSAPTKA ASHAPCRRVV LPPQRGSGDP GAGGGCFGPA GRRSLGDYPR RPGAREDSPR 240
  241 PRCRCLPSLA ADRQCTPRPP EVTAPVVGEL PPLPPRRPAQ ASPLGVPAPP PPVSLAFCQL 300
  301 LSLSLSPLLP LASSLAPERT HLPGPGSLLL SPPSFPARPR EPRGCVTAAP PDKMDTAEED 360
  361 ICRVCRSEGT PEKPLYHPCV CTGSIKFIHQ ECLVQWLKHS RKEYCELCKH RFAFTPIYSP 420
  421 DMPSRLPIQD IFAGLVTSIG TAIRYWFHYT LVAFAWLGVV PLTACRIYKC LFTGSVSSLL 480
  481 TLPLDMLSTE NLLADCLQGC FVVTCTLCAF ISLVWLREQI VHGGAPIWLE HAAPPFNAAG 540
  541 HHQNEAPAGG NGAENVAADQ PANPPAENAV VGENPDAQDD QAEEEEEDNE EEDDAGVEDA 600
  601 ADANNGAQDD MNWNALEWDR AAEELTWERM LGLDGSLVFL EHVFWVVSLN TLFILVFAFC 660
  661 PYHIGHFSLV GLGFEEHVQA SHFEGLITTI VGYILLAITL IICHGLATLV KFHRSRRLLG 720
  721 VCYIVVKVSL LVVVEIGVFP LICGWWLDIC SLEMFDATLK DRELSFQSAP GTTMFLHWLV 780
  781 GMVYVFYFAS FILLLREVLR PGVLWFLRNL NDPDFNPVQE MIHLPIYRHL RRFILSVIVF 840
  841 GSIVLLMLWL PIRIIKSVLP NFLPYNVMLY SDAPVSELSL ELLLLQVVLP ALLEQGHTRQ 900
  901 WLKGLVRAWT VTAGYLLDLH SYLLGDQEEN ENSANQQVNN NQHARNNNAI PVVGEGLHAA 960
  961 HQAILQQGGP VGFQPYRRPL NFPLRIFLLI VFMCITLLIA SLICLTLPVF AGRWLMSFWT1020
 1021 GTAKIHELYT AACGLYVCWL TIRAVTVMVA WMPQGRRVIF QKVKEWSLMI MKTLIVAVLL1080
 1081 AGVVPLLLGL LFELVIVAPL RVPLDQTPLF YPWQDWALGV LHAKIIAAIT LMGPQWWLKT1140
 1141 VIEQVYANGI RNIDLHYIVR KLAAPVISVL LLSLCVPYVI ASGVVPLLGV TAEMQNLVHR1200
 1201 RIYPFLLMVV VLMAILSFQV RQFKRLYEHI KNDKYLVGQR LVNYERKSGK QGSSPPPPQS1260
 1261 SQE