YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114595499, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.99
Transmembrane Helix	82	104	0.88
Non-Cytoplasmic	105	112	0.75
Transmembrane Helix	113	134	0.89
Cytoplasmic	135	141	0.76
Transmembrane Helix	142	161	0.86
Non-Cytoplasmic	162	172	0.82
Transmembrane Helix	173	191	0.86
Cytoplasmic	192	202	0.85
Transmembrane Helix	203	227	0.87
Non-Cytoplasmic	228	234	0.80
Transmembrane Helix	235	256	0.94
Cytoplasmic	257	274	0.77
Transmembrane Helix	275	296	0.83
Non-Cytoplasmic	297	305	0.71
Transmembrane Helix	306	327	0.91
Cytoplasmic	328	334	0.93
Transmembrane Helix	335	355	0.87
Non-Cytoplasmic	356	360	0.60
Transmembrane Helix	361	380	0.88
Cytoplasmic	381	389	0.84
Transmembrane Helix	390	411	0.87
Non-Cytoplasmic	412	419	0.73
Transmembrane Helix	420	445	0.85
Cytoplasmic	446	455	0.69
Transmembrane Helix	456	472	0.77
Non-Cytoplasmic	473	490	0.71
Transmembrane Helix	491	513	0.90
Cytoplasmic	514	537	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDEDKRITY EDSEPSTGMN YTPSMHQETQ EETVMKLKGI DANEPTEGSI LLKSSEKKLQ  60
   61 ETPTEANHVQ RLRQMLACPP HGLLDRVITN VTIIVLLWAV VWSITGSECL PGGNLFGIII 120
  121 LFYCAIIGGK LLGLIKLPTL PPLPSLLGML LAGFLIRNIP VINDNVQIKH KWSSSLRSIA 180
  181 LSIILVRAGL GLDSKALKKL KGVCVRLSMG PCIVEACTSA LLAHYLLGLP WQWGFILGFV 240
  241 LGAVSPAVVV PSMLLLQGGG YGVEKGVPTL LMAAGSFDDI LAITGFNTCL GIAFSTGSTV 300
  301 FNVLRGVLEV VIGVATGSVL GFFIQYFPSR DQDKLVCKRT FLVLGLSVLA VFSSVHFGFP 360
  361 GSGGLCTLVM AFLAGMGWTS EKAEVEKIIA VAWDIFQPLL FGLIGAEVSI ASLRPETVGL 420
  421 CVATVGIAVL IRILTTFLMV CFAGFNLKEK IFISFAWLPK ATVQAAIGSV ALDTARSHGE 480
  481 KQLEDYGMDV LTVAFLSILI TAPIGSLLIG LLGPRLLQKV EHQNKDEEVQ GETSVQV