YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114596709
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMADYSRQK GQFEQKHGGM KQQYSVFRSS QALTGNLPGT QLPRRLRAAG RGGHPSVPAP  60
   61 SRRDALSRFP ASGRSAVPTI GWPCRSHYPH SIRGANGWDR QELDGPPGPP GSTPQPGEAG 120
  121 SETGTPGESS VSVAGSHLAA VQDKPETWEN QWKCFKVLLF NHFCIQLPLI CGTYYFTEYF 180
  181 NIPYDWERMP RWYFLLARCF GCAVIEDTWH YFLHRLLHHK RIYKYIHKVH HEFQAPFGME 240
  241 AEYAHPLETL ILGTGFFIGI VLLCDHVILL WAWVTIRLLE TIDVHSGYDI PLNPLNLIPF 300
  301 YAGSRHHDFH HMNFIGNYAS TFTWWDRIFG TDSQYNAYNE KRKKFEKKTE

Type	Start	End	Confidence
Cytoplasmic	1	157	0.90
Transmembrane Helix	158	177	0.70
Non-Cytoplasmic	178	193	0.70
Transmembrane Helix	194	213	0.67
Cytoplasmic	214	248	0.52
Transmembrane Helix	249	274	0.81
Non-Cytoplasmic	275	350	0.46