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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114589300
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDYLLLLL LASAVAAMEE TLMDTRTATA ELGWTANPAS GWEEVSGYDE NLNTIRTYQV  60
   61 CNVFEPNQNN WLLTTFINRR GAHRIYTEMR FTVRDCSSLP NVPGSCKETF NLYYYETDSV 120
  121 IATKKSAFWS EAPYLKVDTI AADESFSQVD FGGRLMKVNT EVRSFGPLTR NGFYLAFQDY 180
  181 GACMSLLSVR VFFKKCPSIV QNFAVFPETM TGAESTSLVI ARGTCIPNAE EVDVPIKLYC 240
  241 NGDGEWMVPI GRCTCKPGYE PENSETECRP CPAGTFKASQ EAEGCSHCPS NSRSPAEASP 300
  301 ICTCRTGYYR ADFDPPEVAC TSVPSGPRNV ISIVNETSII LEWHPPRETG GRDDVTYNII 360
  361 CKKCRADRRS CSRCDDNVEF VPRQLGLTEC RVSISSLWAH TPYTFDIQAI NGVSSKSPFP 420
  421 PQHVSVNITT NQAAPSTVPI MHQVSATMRS ITLSWPQPEQ PNGIILDYEI RYYEKEHNEF 480
  481 NSSMARSQTN TARIDGLRPG MVYVVQVRAR TVAGYGKFSG KMCFQTLTDG KGRGGQQLRE 540
  541 QLPLIAGSAA AGVVFVVSLV AISIVCSRKR AYSKEAVYSD KLQHYSSPGM KIYIDPFTYE 600
  601 DPNEAVREFA KEIDVSFVKI EEVIGAGEFG EVYKGRLKLP GKREIYVAIK TLKAGYSEKQ 660
  661 RRDFLSEASI MGQFDHPNII RLEGVVTKSR PVMIITEFME NGALDSFLRQ NDGQFTVIQL 720
  721 VGMLRGIAAG MKYLAEMNYV HRDLAARNIL VNSNLVCKVS DFGLSRYLQD DTSDPTYTSS 780
  781 LGGKIPVRWT APEAIAYRKF TSASDVWSYG IVMWEVMSFG ERPYWDMSNQ DVINAIEQDY 840
  841 RLPPPMDCPA ALHQLMLDCW QKDRNSRPRF AEIVNTLDKM IRNPASLKTV ATITAVPSQP 900
  901 LLDRSIPDFT AFTTVDDWLS AIKMVQYRDS FLTAGFTSLQ LVTQMTSEDL LRIGITLAGH 960
  961 QKKILNSIHS MRVQMSQSPT AMA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle