YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114588542
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	310	0.99
Transmembrane Helix	311	333	0.90
Cytoplasmic	334	442	0.99
Transmembrane Helix	443	464	0.95
Non-Cytoplasmic	465	497	0.92
Transmembrane Helix	498	521	0.83
Cytoplasmic	522	541	0.94
Transmembrane Helix	542	564	0.90
Non-Cytoplasmic	565	570	0.87
Transmembrane Helix	571	590	0.90
Cytoplasmic	591	600	0.83
Transmembrane Helix	601	621	0.95
Non-Cytoplasmic	622	627	0.80
Transmembrane Helix	628	649	0.92
Cytoplasmic	650	688	0.97
Transmembrane Helix	689	709	0.93
Non-Cytoplasmic	710	714	0.88
Transmembrane Helix	715	736	0.92
Cytoplasmic	737	743	0.95
Transmembrane Helix	744	767	0.89
Non-Cytoplasmic	768	797	0.98
Transmembrane Helix	798	817	0.94
Cytoplasmic	818	832	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGCLRLALL CALPWLLLAA SPGHTAKSPR QPPAPRRDPF DAARGADFDH VYSGVVNLST  60
   61 ENIYSFNYTS QPDQVTAVRV YVNSSSENLN YPVLVVVRQQ KEVLSWQVPL LFQGLYQRSY 120
  121 NYQEVSRTLC PSEATNETGP LQQLIFVDVA SMAPLGAQYK LLVTKLKHFQ LRTNVAFHFT 180
  181 ASPSQPQYFL YKFPKDVDSV IIKVVSEMAY PCSVVSVQNI MCPVYDLDHN VEFNGVYQSM 240
  241 TKKAAITLQK KDFPGEQFFV VFVIKPEDYA CGGSFFIQEK ENQTWNLQRK KNLEVTIVPS 300
  301 IKESVYVKSS LFSVFIFLSF YLGCLLVGFV HYLRFQRKSI DGSFGSNDGS GNMVASHPIA 360
  361 ASTPEGSNYG TIDESSSSPG RQMSSPDGGP PGQSDTDSSV EESDFDTMPD IESDKNIIRT 420
  421 KMFLYLSDLS RKDRRIVSKK YKIYFWNIIT IAVFYALPVI QLVITYQTVV NVTGNQDICY 480
  481 YNFLCAHPLG VLSAFNNILS NLGHVLLGFL FLLIVLRRDI LHRRALEAKD IFAVEYGIPK 540
  541 HFGLFYAMGI ALMMEGVLSA CYHVCPNYSN FQFDTSFMYM IAGLCMLKLY QTRHPDINAS 600
  601 AYSAYASFAV VIMVTVLGVV FGKNDVWFWV IFSAIHVLAS LALSTQIYYM GRFKIDVSDT 660
  661 DLGIFRRAAM VFYTDCIQQC SRPLYMDRMV LLVVGNLVNW SFALFGLIYR PRDFASYMLG 720
  721 IFICNLLLYL AFYIIMKLRS SEKVLPVPLF CIVATAVMWA AALYFFFQNL SSWERTPAES 780
  781 REKNRECILL DFFDDHDIWH FLSATALFFS FLVLLTLDDD LDVVRRDQIP VF