YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114589192
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKGELRPAA RAESENRQSL CESPITRLRV MMPLPVSVGF VWALPVLPFT SDPFLLRFRQ  60
   61 NINVCGWLES SGPVSVGVFW ACGVSWTGAA GLQDGALSDT MARNAEKAMT ALARFRQAQL 120
  121 EEGKVKERRP FLASECTELP KAEKWRRQII GEISKKVAQI QNAGLGEFRI RDLNDEINKL 180
  181 LREKGHWEVR IKELGGPDYG KVGPKMLDHE GKEVPGNRGY KYFGAAKDLP GVRELFEKEP 240
  241 LPPPRKTRAE LMKAIDFEYY GYLDEDDGVI VPLEQEYEKK LRVELVEKWK AEREARLARG 300
  301 EKEEEEEEEE EINIYAVTEE ESDEEGSQEK GGDDSQQKFI AHVPVPSQQE IEEALVRRKK 360
  361 MELLQKYASE TLQAQSEEAR RLLGCRSGTR PARSGSAPSP KATTAVPMGP SLPTTSPRGA 420
  421 PSCRCLTGLR M

Type	Start	End	Confidence
Cytoplasmic	1	29	0.82
Transmembrane Helix	30	49	0.81
Non-Cytoplasmic	50	431	0.75