YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119598935, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGHRVDYFI ASKAVDCLLD SKWAKAKKGE EALFTTRESV VDYCNRLLKK QFFHRALKVM  60
   61 KMKYDKDIKK EKDKGKAESG KEEDKKSKKE NIKDEKTKKE KEKKKDGEKE ESKKEETPGT 120
  121 PKKKETKKKF KLEPHDDQVF LDGNEVYVWI YDPVHFKTFV MGLILVIAVI AATLFPLWPA 180
  181 EMRVGVYYLS VGAGCFVASI LLLAVARCIL FLIIWLITGG RHHFWFLPNL TADVGFIDSF 240
  241 RPLYTHEYKG PKADLKKDEK SETKKQQKSD SEEKSDSEKK EDEEGKVGPG NHGTEGSGGE 300
  301 RHSDTDSDRR EDDRSQHSSG NGNDFEMITK EELEQQTDGD CEEDEEEEND GETPKSSHEK 360
  361 S

Type	Start	End	Confidence
Cytoplasmic	1	157	0.96
Transmembrane Helix	158	178	0.93
Non-Cytoplasmic	179	188	0.76
Transmembrane Helix	189	217	0.83
Cytoplasmic	218	361	0.93