YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114588141
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRARRQECL SPPQTAFSLS LLQLPQGPSA PGRGPARSGG GRRRGSYGGG GLCREVRQRR  60
   61 RGESRVLWSE LEGEAGGAGG WAYAGDRLEN KTSVSVASWS SLNARMDNRF ATAFVIACVL 120
  121 SLISTIYMAA SIGTDFWYEY RSPVQENSSD LNKSIWDEFI SDEADEKTYN DALFRYNGTV 180
  181 GLWRRCITIP KNMHWYSPPE RTESFDVVTK CVSFTLTEQF MEKFVDPGNH NSGIDLLRTY 240
  241 LWRCQFLLPF VSLGLMCFGA LIGLCACICR SLYPTIATGI LHLLAGLCTL GSVSCYVAGI 300
  301 ELLHQKLELP DSVSGEFGWS FCLACVSAPL QFMASALFIW AAHTNRKEYT LMKAYRVA

Type	Start	End	Confidence
Cytoplasmic	1	109	0.83
Transmembrane Helix	110	130	0.83
Non-Cytoplasmic	131	245	0.94
Transmembrane Helix	246	269	0.90
Cytoplasmic	270	278	0.77
Transmembrane Helix	279	300	0.94
Non-Cytoplasmic	301	316	0.90
Transmembrane Helix	317	342	0.89
Cytoplasmic	343	358	0.93