YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114587122
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSCGLRVL WQLLGPAALF PRGPAGVWTS LAGLLVHAGS SVTFLGLCTI VLVSLGTHYS  60
   61 GWCKLSAAAE ETTRAKAAVA GQEVLVPWGM APLPVSIAVL EQGLFPLPGK ALQVLRKRAA 120
  121 CVLLDCRPHE LFESSHIETA INLAIPGLML RRLRKGNLPI RSIIPNHADK ERFATRCKAA 180
  181 TVLLYDEATA EWQPEPGAPA SVLGLLLQKL RDDGCQAYYL QGGFNKFQTE YSEHCETNVD 240
  241 SSSSPSSSPP TSVLGLGGLR ISSDCSDGES DRELPSSATE SDGSPVPSSQ PAFPVQILPY 300
  301 LYLGCAKDST NLDVLGKYGI KYILNVTPNL PNAFEHGGEF TYKQIPISDH WSQNLSQFFP 360
  361 EAISFIDEAR SKKCGVLVHC LAGISRSVTV TVAYLMQKMN LSLNDAYDFV KRKKSNISPN 420
  421 FNFMGQLLDF ERTLGLSSPC DNHASSEQLY FSTPTNHNLF PLNTLEST

Type	Start	End	Confidence
Cytoplasmic	1	8	0.76
Transmembrane Helix	9	28	0.68
Non-Cytoplasmic	29	37	0.53
Transmembrane Helix	38	62	0.70
Cytoplasmic	63	83	0.69
Transmembrane Helix	84	100	0.61
Non-Cytoplasmic	101	468	0.79