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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114587948
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.50
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTVTTVTP SAALVLFPTD PEDVERGNDH GTPIPTSDND DNSLGYTGSR LRQEDFPPRI  60
   61 VEHPSDLIVS KGEPATLNCK AEGRPTPTIE WYKGGERVET DKDDPRSHRM LLPSGSLFFL 120
  121 RIVHGRKSRP DEGVYVCVAR NYLGEAVSHN ASLEVAILRD DFRQNPSDVM VAVGEPAVME 180
  181 CQPPRGHPEP TISWKKDGSP LDDKDERITI RGGKLMITYT RKSDAGKYVC VGTNMVGERE 240
  241 SEVAELTVLE RPSFVKRPSN LAVTVDDSAE FKCEARGDPV PTVRWRKDDG ELPKSRYEIR 300
  301 DDHTLKIRKV TAGDMGSYTC VAENMVGKAE ASATLTVQEP PHFVVKPRDQ VVALGRTVTF 360
  361 QCEATGNPQP AIFWRREGSQ NLLFSYQPPQ SSSRFSVSQT GDLTITNVQR SDVGYYICQT 420
  421 LNVAGSIITK AYLEVTDVIA DRPPPVIRQG PVNQTVAVDG TFVLSCVATG SPVPTILWRK 480
  481 DGVLVSTQDS RIKQLENGVL QIRYAKLGDT GRYTCIASTP SGEATWSAYI EVQEFGVPVQ 540
  541 PPRPTDPNLI PSAPSKPEVT DVSRNTVTLS WQPNLNSGAT PTSYIIEAFS HASGSSWQTV 600
  601 AENVKTETFA IKGLKPNAIY LFLVRAANAY GISDPSQISD PVKTQDVLPT SQGVDHKQVQ 660
  661 RELGNAVLHL HNPTVLSSSS IEVHWTVDQQ SQYIQGYKIL YRPSGANHGE SDWLVFEVRT 720
  721 PAKNSVVIPD LRKGVNYEIK ARPFFNEFQG ADSEIKFAKT LEEAPSAPPQ GVTVSKNDGN 780
  781 GTAILVSWQP PPEDTQNGMV QEYKVWCLGN ETRYHINKTV DGSTFSVVIP FLVPGIRYSV 840
  841 EVAASTGAGS GVKSEPQFIQ LDAHGNPVSP EDQVSLAQQI SDVVKQPAFI AGIGAACWII 900
  901 LMVFSIWLYR HRKKRNGLTS TYAGIRKVPS FTFTPTVTYQ RGGEAVSSGG RPGLLNISEP 960
  961 ATQPWLADTW PNTGNNHNDC SISCCTAGNG NSDSNLTTYS RPADCIANYN NQLDNKQTNL1020
 1021 MLPESTVYGD VDLSNKINEM KTFNSPNLKD GRFVNPSGQP TPYATTQLIQ SNLSNNMNNG1080
 1081 SGDSGEKHWK PLGQQKQEVA PVQYNIMEQN KLNKDYRAND TVPQTIPYNQ SYDQNTGGSY1140
 1141 NSSDRGSSTS GSQGHKKGAR TPKVPKQGGM NWADLLPPPP AHPPPHSNSE EYNISVDESY1200
 1201 DQEMPCPVPP ARMYLQQDEL EEEEDERGPT PPVRGAASSP AAVSYSHQST ATLTPSPQEE1260
 1261 LQPMLQDCPE ETGHMQHQPD RRRQPVSPPP PPRPISPPHT YGYISGPLVS DMDTDAPEEE1320
 1321 EDEADMEVAK MQTRRLLLRG LEQTPASSVG DLESSVTGSM INGWGSASEE DNISSGRSSV1380
 1381 SSSDGSFFTD ADFAQAVAAA AEYAGLKVAR RQMQDGVGRR HFHASQCPRP TSPVSTDSNM1440
 1441 SAAVMQKTRP AKKPKHQPGH LRRETYTDDL PPPPVPPPAI KSPTAQSKTQ LEVRPVVVPK1500
 1501 LPSVDARTDR SSDRKGSSYK GREVLDGRQV VDMRTNPGDP REAQEQQNDG KGRGNKAAKR1560
 1561 DLPPAKTHLI QEDILPYCRP TFPTSNNPRD PSSSSSMSSR GSGSRQREQA NVGRRNIAEM1620
 1621 QVLGGYERGE DNNEELEETE S

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