YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114589143
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	142	0.99
Transmembrane Helix	143	165	0.94
Non-Cytoplasmic	166	185	0.93
Transmembrane Helix	186	208	0.86
Cytoplasmic	209	225	0.87
Transmembrane Helix	226	246	0.90
Non-Cytoplasmic	247	253	0.81
Transmembrane Helix	254	276	0.93
Cytoplasmic	277	283	0.90
Transmembrane Helix	284	304	0.92
Non-Cytoplasmic	305	314	0.75
Transmembrane Helix	315	333	0.67
Cytoplasmic	334	351	0.68
Transmembrane Helix	352	372	0.91
Non-Cytoplasmic	373	393	0.71
Transmembrane Helix	394	415	0.79
Cytoplasmic	416	422	0.57
Transmembrane Helix	423	441	0.53
Non-Cytoplasmic	442	470	0.73
Transmembrane Helix	471	491	0.82
Cytoplasmic	492	523	0.95
Transmembrane Helix	524	545	0.82
Non-Cytoplasmic	546	550	0.57
Transmembrane Helix	551	569	0.84
Cytoplasmic	570	587	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIKARHKG TLPGGLPEFF CEADYFPSCP GPSPAKSLQK LIPFVLRWMG THTHDKPPGL  60
   61 LNDSDSEGAR TDVSLGGAAV RWNALGRGQR RLTRSGAELK RDPEPEQPPP WQVIKFLEVI 120
  121 KPFCVILPEI QKPERKIQFK EKVLWTAITL FIFLVCCQIP LFGIMSSDSA DPFYWMRVIL 180
  181 ASNRGTLMEL GISPIVTSGL IMQLLAGAKI IEVGDTPKDR ALFNGAQKLF GMIITIGQSI 240
  241 VYVMTGMYGD PSEMGAGICL LITIQLFVAG LIVLLLDELL QKGYGLGSGI SLFIATNICE 300
  301 TIVWKAFSPT TVNTGRGMEF EGAIIALFHL LATRTDKVRA LREAFYRQNL PNLMNLIATI 360
  361 FVFAVVIYFQ GFRVDLPIKS ARYRGQYNTY PIKLFYTSNI PIILQSALVS NLYVISQMLS 420
  421 ARFSGNLLVS LLGTWSDTSS GGPARAYPVG GLCYYLSPPE SFGSVLEDPV HAVVYIVFML 480
  481 GSCAFFSKTW IEVSGSSAKD VAKQLKEQQM VMRGHRETSM VHELNRYIPT AAAFGGLCIG 540
  541 ALSVLADFLG AIGSGTGILL AVTIIYQYFE IFVKEQSEVG SMGALLF