YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114590804
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.98
Transmembrane Helix	41	61	0.96
Non-Cytoplasmic	62	96	0.93
Transmembrane Helix	97	115	0.94
Cytoplasmic	116	123	0.86
Transmembrane Helix	124	144	0.90
Non-Cytoplasmic	145	151	0.69
Transmembrane Helix	152	169	0.70
Cytoplasmic	170	176	0.51
Transmembrane Helix	177	196	0.82
Non-Cytoplasmic	197	203	0.51
Transmembrane Helix	204	224	0.87
Cytoplasmic	225	231	0.56
Transmembrane Helix	232	251	0.77
Non-Cytoplasmic	252	287	0.80
Transmembrane Helix	288	307	0.93
Cytoplasmic	308	332	0.83
Transmembrane Helix	333	356	0.61
Non-Cytoplasmic	357	361	0.52
Transmembrane Helix	362	389	0.60
Cytoplasmic	390	401	0.43
Transmembrane Helix	402	423	0.78
Non-Cytoplasmic	424	438	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGLRKRGR SGSAAQAAGL CKQWLQRAWQ ERRLLLREPR YTLLVAACLC LAEVGITFWV  60
   61 IHRVAYTEID WKAYMAEVEG VINGTYDYTQ LRGDTGPLVY PAGFVYIFTG LYYATSRGTD 120
  121 IRMAQNIFAV LYLATLLLVF LIYHQTCKVP PFVFFFMCCA SYRVHSIFVL RLFNDPVAMV 180
  181 LLFLSINLLL AQRWGWGCCF FSLAVSVKMN VLLFAPGLLF LLLTQFGFRG SLPKLGICAG 240
  241 LQVVLGLPFL LENPSGYLSR SFDLGRQFLF RWTVNWRFLP EALFLHRAFH LALLTAHLTL 300
  301 LLLFALCRWH RTGESILSLL RDPSKRKVPP QPLTPNQIVS TLFTSNFIGI CFSRSLHYQF 360
  361 YVWYFHTLPY LLWAMPARWL THLLRLLVLG LIELSWNTYP STSCSSAALH ICHAVILLQL 420
  421 WLGPQPFPKS TQHSKKAH