YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114587240
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSLTFCSRK VSGSRAPTRR YPERAQIGLG EWVSVNWTYT MCSLTFCSRK VSGSRAPTRR  60
   61 PSQLLPPDLE LVIPRLSFRS AVPGSPGLST CGRGGVGEGS GTRDPAPWPG RSPAPRGRVG 120
  121 RAAAAEARPN LGCANQALRS QTSGYARRGV GGRAEVPAQA WDPGCGFGGA APAGSEAGRA 180
  181 LGPRAPPARP AMQGPAGNAS RGLPGGSPST VASRAGRCES GALMHSFGIF LQGLLGVVAF 240
  241 STLMLKRFRE PKHERRPWRI WFLDTSKQAI GMLFIHFANV YLADLTEEDP CSLYLINFLL 300
  301 DATVGMLLIY VGVRAVSVLV EWQQWESLRF GEYGDPLQCG AWVGQCALYI VIMIFEKSVV 360
  361 FIVLLILQWK KVALLNPIEN PDLKLAIVML IVPFFVNALM FWVVDNFLMR KGKTKAKLEE 420
  421 RGANQDSRNG SKVRYRRAAS HEESESEILI SADDEMEESD VEEDLRRLTP LKPVKKKKHR 480
  481 FGLPAGAQEA PIKKKRPPVK EEDLKGARGN LTKNQEIKSK TYQVMRECEQ AGSAAPSVFS 540
  541 CTRTGTETVF EKPKAGPAKS VFG

Type	Start	End	Confidence
Non-Cytoplasmic	1	221	0.93
Transmembrane Helix	222	245	0.89
Cytoplasmic	246	259	0.91
Transmembrane Helix	260	283	0.78
Non-Cytoplasmic	284	293	0.83
Transmembrane Helix	294	318	0.79
Cytoplasmic	319	345	0.77
Transmembrane Helix	346	367	0.82
Non-Cytoplasmic	368	384	0.86
Transmembrane Helix	385	404	0.96
Cytoplasmic	405	563	0.94