YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114587152
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGALCGCWF RLGGARALIP FGPLTTRSAM TSKGPEEEHP SVTLFRQYLR IRTVQPKPDY  60
   61 GAAVAFFEET ARQLGLGCQK VEVAPGYVVT VLTWPGTNPT LSSILLNSHT DVVPVFKEHW 120
  121 SHDPFEAFKD SEGYIYARGA QDMKCVSIQY LEAVRRLKVE GHRFPRTIHM TFVPDEEVGG 180
  181 HQGMELFVQR PEFHALRAGF ALDEGIANPT DAFTVFYSER SPWWVRVTST GRPGHASRFM 240
  241 EDTAAEKLHK VVNSILAFRE KEWQRLQSNP HLKEGSVTSV NLTKLEGGVA YNVIPATMSA 300
  301 SFDFRVAPDV DFKAFEEQLQ SWCQAAGEGV TLEFAQKWMH PQVTPTDDSN PWWAAFSRVC 360
  361 KDMNLTLEPE IMPAATDNRY IRAVGVPALG FSPMNRTPVL LHDHDERLHE AVFLRGVDIY 420
  421 TRLLPALASV PALPSDS

Type	Start	End	Confidence
Signal Peptide	1	17	0.65
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	437	0.99