YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114581695
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMEGYWRFL ALLGSALLVG FLSVIFALVW VLHYREGLGW DGSALEFNWH PVLMVTGFVF  60
   61 IQGIAIVVYR LPWTWKCSKL LMKSIHAGLN AVAAILAIIS VVAVFENHNV NNMANMYSLH 120
  121 SWVGLIAVIC YLLQLLSGFS VFLLPWAPLS LRAFLMPIHV YSGIVIFGTV IATALMGLTE 180
  181 KLIFSLRDPA YSTFPPEGVF VNTLGLLILV FGALIFWIVT RPQWKRPKEP NSTILHPNGG 240
  241 TEQGARGSMP AYSGNNMDKS DSELNNEVAA RKRNLALDEA GQRSTM

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	32	0.93
Non-Cytoplasmic	33	49	0.92
Transmembrane Helix	50	73	0.88
Cytoplasmic	74	84	0.89
Transmembrane Helix	85	105	0.93
Non-Cytoplasmic	106	121	0.90
Transmembrane Helix	122	146	0.89
Cytoplasmic	147	157	0.80
Transmembrane Helix	158	178	0.93
Non-Cytoplasmic	179	198	0.92
Transmembrane Helix	199	219	0.96
Cytoplasmic	220	286	0.99