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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114578871
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKCGGMFYS GVASSPSLQE ALRAQLTPLQ SRKVVAIPPP REDKDFSECS RGTGDREGMS  60
   61 TLMGRGDATN PSDSILVQCA ECESGAAWRR GTWRMEVLPL PESPVTEGLQ CVCGAGPQQG 120
  121 GRVNPFPRGH YRSGGTLLPS RLPLRPAFSR SCVTKAPPFT PPRQGLLALL PGRDLPFALV 180
  181 KGRQLALCPK TEAAAETQEA EVLRPRLRAL APGPGLPLTG WARGRQQGAL AGRDAPSSRG 240
  241 AGPTELGVST AEPGGVVVYC DPAPQPHARP ALPAGSRAAE GRAGRTGTGP SPVPPGEGSR 300
  301 PGAGPRASSA SRLPAPTDPS IAARVLPGGR RPRPPGPSAL PRRGRREEGR RGWAKACELS 360
  361 GRRVLRASFK NRPSPARAPR ASGIRVAGGR DFLRSRGGTG TAAGQLGKLL WGGRQGPRAP 420
  421 VEEDVGGRLL VLGVPDLLGP ARPGHGAPAP SAPPEGRRSC LAEPGSAVVH GYWDFRCTWC 480
  481 EAYLELDVLF CTSSIVHLSA ISLDRYWAVS RALEYNSKRT PRRIKCIILT VWLIAAVISL 540
  541 PPLIYKGDQG PQPRGRPQCK LNQEAWYILA SSIGSFFAPC LIMILVYLRI YLIAKRSNRR 600
  601 GPRAKGGPGQ GESKQPRPDH GGALASAKLP ALASLASARE VNGHSKSTGE KEEGETPEDT 660
  661 GTRALPPSWA ALPNSRQGQK EDVCGASPED EAEEEEEEEE EECEPQAVPV SPASACSPPL 720
  721 QQPQGSRVLA TLRGQVLLGR GVGAIGGQWW RRRAQLTREK RFTFVLAVVI GVFVLCWFPF 780
  781 FFSYSLGAIC PKHCKVPHGL FQFFFWIGYC NSSLNPVIYT IFNQDFRRAF RRILCRPWTQ 840
  841 TAW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle