YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114576004
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTSTTGST VLQPFSNAVQ LPMDQVNFVV CQLFALLAAI WFRTYLHSSK TSSFIRHVVA  60
   61 TLLGLYLALF CFGWYALHFL VQSGISYCIM IIIGVENMHN YCFVFALGYL TVCQVTRVYI 120
  121 FDYGQYSADF SGPMMIITQK ITSLACEIHD GMFRKDEELT SSQRDLAVRR MPSLLEYLSY 180
  181 NCNFMGILAG PLCSYKDYIT FIEGRSYHIT QSGENGKEET QYEKTEPSPN TAVVQKLLVC 240
  241 GLSLLFHLTI CTTLPVEYNI DEHFQATASW PTKIIYLYIS LLAARPKYYF AWTLADAINN 300
  301 AAGFGFRGYD ENGAARWDLI SNLRIQQIEM STSFKMFLDN WNIQTALWLK RVCYERTSFS 360
  361 PTIQTFILSA IWHGVYPGYY LTFLTGVLMT LAARAMRNNF RHYFVEPSQL KLFYDVITWI 420
  421 VTQVAISYTV VPFVLLSVKP SLTFYSSWYY CLHILGILVL LLLPVKKTQR RKNTHENIQL 480
  481 SQSKKFDEGE NSLGRNSFST TNNVCNQNQE IASRHSSLKQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.86
Transmembrane Helix	25	45	0.88
Cytoplasmic	46	53	0.85
Transmembrane Helix	54	77	0.87
Non-Cytoplasmic	78	98	0.60
Transmembrane Helix	99	113	0.59
Cytoplasmic	114	236	0.65
Transmembrane Helix	237	251	0.27
Non-Cytoplasmic	252	369	0.60
Transmembrane Helix	370	395	0.80
Cytoplasmic	396	411	0.92
Transmembrane Helix	412	436	0.85
Non-Cytoplasmic	437	445	0.78
Transmembrane Helix	446	465	0.93
Cytoplasmic	466	520	0.99