YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114576225
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVTSFYPG SNWRKPRGRS RSLPANRTSP CRPTLLASAF PPAPPPSPPS ARSVLIGQRR  60
   61 AGGGTLGTSS AHHWAVDRTS APGSKWWDSR RGRGDVKVSA WVSPRASSGR ARIEGRAEVP 120
  121 PLRAAGCRCR SPQGRLRAGS SRGSSRSGSA LALALLALRP GPGPGPGPAP AMEKTELIQK 180
  181 AKLAEQAERY DDMATCMKAV TEQGAELSNE ERNLLSVAYK NVVGGRRSAW RVISSIEQKT 240
  241 DTSDKKLQLI KDYREKVESE LRSICTTVLE LLDKYLIANA TNPESKVFYL KMKGDYFRYL 300
  301 AEVACGDDRK QTIDNSQGAY QEAFDISKKE MQPTHPIRLG LALNFSVFYY EILNNPELAC 360
  361 TLAKTAFDEA IAELDTLNED SYKDSTLIMQ LLRDNLTLWT SDSAGEECDA AEGAEN

Type	Start	End	Confidence
Signal Peptide	1	53	0.83
N-region	1	44
H-region	45	50
C-region	51	53
Cleavage Site	53	54
Non-Cytoplasmic	54	416	0.99