YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114583409
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.89
Transmembrane Helix	27	48	0.87
Cytoplasmic	49	71	0.89
Transmembrane Helix	72	93	0.88
Non-Cytoplasmic	94	105	0.82
Transmembrane Helix	106	127	0.96
Cytoplasmic	128	146	0.95
Transmembrane Helix	147	168	0.91
Non-Cytoplasmic	169	188	0.91
Transmembrane Helix	189	209	0.92
Cytoplasmic	210	251	0.99
Transmembrane Helix	252	274	0.85
Non-Cytoplasmic	275	311	0.87
Transmembrane Helix	312	334	0.85
Cytoplasmic	335	381	0.96
Transmembrane Helix	382	404	0.89
Non-Cytoplasmic	405	410	0.77
Transmembrane Helix	411	432	0.94
Cytoplasmic	433	499	0.97
Transmembrane Helix	500	521	0.85
Non-Cytoplasmic	522	531	0.79
Transmembrane Helix	532	549	0.59
Cytoplasmic	550	843	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTVGNYCEA EGPVGPAWTQ DGLSPCFFFT LVPSTRMALG TLALVLALPC RRRERPAGAD  60
   61 SLSWGAGPRI SPYVLQLLLA TLQAALPLAG LAGRVGTARG APLPSYLLLA SVLESLAGAC 120
  121 GLWLLVVERS QARQRLAMGI WIKFRHSPGL LLLWTVAFAA ENLALVSWNS PQWWWARADL 180
  181 GQQVQFSLWV LRYVVSGGLF VLGLWAPGLR PQSYTLQVHE EDQDVERSQV RSAAQQSTWR 240
  241 DFGRKLRLLS GYLWPRGSPA LQLVVLICLG LMGLERALNV LVPIFYRNIV NLLTEKAPWN 300
  301 SLAWTVTSYV FLKFLQGGGT GSTGFVSNLR TFLWIRVQQF TSRRVELLIF SHLHELSLRW 360
  361 HLGRRTGEVL RIADRGTSSV TGLLSYLVFN VIPTLADIII GIIYFSMFFN AWFGLIVFLC 420
  421 MSLYLTLTIV VTEWRTKFRR AMNTQENATR ARAVDSLLNF ETVKYYNAES YEVERYREAI 480
  481 IKYQGLEWKS SASLVLLNQT QNLVIGLGLL AGSLLCAYFV SEQKLQVGDY VLFGTYIIQL 540
  541 YMPLNWFGTY YRMIQTNFID MENMFDLLKE ETEVKDLPGA GPLRFQKGRI EFENVHFSYA 600
  601 DGRETLQDVS FTVMPGQTLA LVGPSGAGKS TILRLLFRFY DISSGCIRID GQDISQVTQA 660
  661 SLRSHIGVVP QDTVLFNDTI ADNIRYGRVT AGNDEVEAAA QAAGIHDAIM AFPEGYRTQV 720
  721 GERGLKLSGG EKQRVAIART ILKAPDIILL DEATSALDTS NERAIQASLA KVCANRTTIV 780
  781 VAHRLSTVVN ADQILVIKDG CIVERGRHEA LLSRGGVYAD MWQLQQQGQE ETSEDTKPQT 840
  841 MER