YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSR3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKGSSKQQ SEEDLLLQDF SRNLSAKSSA LFFGNAFIVS AIPIWLYWRI WHMDLIQSAV  60
   61 LYSVMTLVST YLVAFAYKNV KFVLKHKVAQ KREDAVSKEV TRKLSEADNR KMSRKEKDER 120
  121 ILWKKNEVAD YEATTFSIFY NNTLFLVVVI VASFFILKNF NPTVNYILSI SASSGLIALL 180
  181 STGSK

Type	Start	End	Confidence
Cytoplasmic	1	29	0.94
Transmembrane Helix	30	48	0.95
Non-Cytoplasmic	49	57	0.71
Transmembrane Helix	58	77	0.94
Cytoplasmic	78	137	0.94
Transmembrane Helix	138	157	0.93
Non-Cytoplasmic	158	163	0.82
Transmembrane Helix	164	183	0.91
Cytoplasmic	184	185	0.80