YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114572034
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPALWRHLV PLLAQGGSKE KQMALIVGRK KEKALHHLKC LNDPLNPSAD QCAMAASLFI  60
   61 PTTGARERQC SYFVAAPAAD SSDSAQSRSP SPWRLIDLCA IWDAGVYLPS AACNRASSGV 120
  121 ARKRLNEAEK LSSVQEAQLK RLEVTRPRVL GSRERGQVPR MARQPPPPWV HAAFLLCLLS 180
  181 LGGAIEIPMD LTQPPTITKQ SVKDHIVDPR DNILIECEAK GNPAPSFHWT RNSRFFNIAK 240
  241 DPRVSMRRRS GTLVIDFRSG GRPEEYEGEY QCFARNKFGT ALSNRIRLQV SKSPLWPKEN 300
  301 LDPVVVQEGA PLTLQCNPPP GLPSPVIFWM SSSMEPITQD KRVSQGHNGD LYFSNVMLQD 360
  361 MQTDYSCNAR FHFTHTIQQK NPFTLKVLTN HPYNDSSLRN HPDMYSARGV AERTPSFMYP 420
  421 QGTASSQMVL RGMDLLLECI ASGVPTPDIA WYKKGGDLPS DKAKFENFNK ALRITNVSEE 480
  481 DSGEYFCLAS NKMGSIRHTI SVRVKAAPYW LDEPKNLILA PGEDGRLVCR ANGNPKPTVQ 540
  541 WMVNGEPLQS APPNPNREVA GDTIIFRDTQ ISSRAVYQCN TSNEHGYLLA NAFVSVLDVP 600
  601 PRMLSPRNQL IRVILYNRTR LDCPFFGSPI PTLRWFKNGQ GSNLDGGNYH VYENGSLEIK 660
  661 MIRKEDQGIY TCVATNILGK AENQVRLEVK DPTRIYRMPE DQVAKRGTTV QLECRVKHDP 720
  721 SLKLTVSWLK DDEPLYIGNR MKKEDDSLTI FGVAERDQGS YTCVASTELD QDLAKAYLTV 780
  781 LGRPDRPRDL ELTDLAERSV RLTWIPGDAN NSPITDYVVQ FEEDQFQPGV WHDHSKYPGS 840
  841 VNSAVLRLSP YVNYQFRVIA INEVGSSHPS LPSERYRTSG APPESNPGDV KGEGTRKNNM 900
  901 EITWTPMNAT SAFGPNLRYI VKWRRRETRE AWNNVTVWGS RYVVGQTPVY VPYEIRVQAE 960
  961 NDFGKGPEPE SVIGYSGEDY PRAAPTEVKV RVMNSTAISL QWNRVYSDTV QGQLREYRAY1020
 1021 YWRESSLLKN LWVSQKRQQA SFPGDRLRGM VSRLFPYSNY KLEMVVVNGR GDGPRSETKE1080
 1081 FTTPEGVPSA PRRFRVRQPN LETINLEWDH PEHPNGIMIG YTLKYVAFNG TKVGKQIVEN1140
 1141 FSPNQTKFTV QRTDPVSRYR FTLSARTQVG SGEAVTEESP APPNEAYTNN QADIATQGWF1200
 1201 IGLMCAIALL VLILLIVCFI KRSRGGKYPV REKKDVPLGP EDPKEEDGSF DYSDEDNKPL1260
 1261 QGSQTSLDGT IKQQESDDSL VDYGEGGEGQ FNEDGSFIGQ YTVKKDKEET EGNESSEATS1320
 1321 PVNAIYSLA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle