YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194390170
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNFGAPSG TSGTAAATAA PAGGFGGFGT TSTTAGSAFS FSAPTNTGTT ALGGLFSQPT  60
   61 QAPTQSNQLI NTASALSAPT LLGDERDAIL AKWNQLQAFW GTGKGYFNNN IPPVEFTQEN 120
  121 PFCRFKAVGY SCMPSNKDED GLVVLVFNKK ETEIRSQQQQ LVESLHKVLG GNQTLTVNVE 180
  181 GTKTLPDDQT EVVIYVVERS PNGTSRRVPA TTLYAHFEQA NIKTQLQQLG VTLSMTRTEL 240
  241 SPAQIKQLLQ NPPAGVDPII WEQAKVDNPD SEKLIPVPMV GFKELLRRLK VQDQMTKQHQ 300
  301 TRLDIISEDI SELQKNQTTS VAKIAQYKRK LMDLSHRTLQ VLIKQEIQRK SGYAIQADEE 360
  361 QLRVQLDTIQ GELNAPTQFK GRLNELMSQI RMQNHFGAVR SEERYYIDAD LLREIKQHLK 420
  421 QQQEGLSHLI SIIKDDLEDI KLVEHGLNET IHIRGGVFS

Type	Start	End	Confidence
Signal Peptide	1	22	0.76
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	459	0.98