YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114557934
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	234	0.56
Transmembrane Helix	235	261	0.82
Non-Cytoplasmic	262	416	0.50
Transmembrane Helix	417	436	0.95
Cytoplasmic	437	442	0.38
Transmembrane Helix	443	467	0.90
Non-Cytoplasmic	468	485	0.48
Transmembrane Helix	486	508	0.94
Cytoplasmic	509	527	0.40
Transmembrane Helix	528	542	0.49
Non-Cytoplasmic	543	543	0.10
Transmembrane Helix	544	562	0.83
Cytoplasmic	563	581	0.60
Transmembrane Helix	582	605	0.75
Non-Cytoplasmic	606	633	0.61
Transmembrane Helix	634	653	0.68
Cytoplasmic	654	732	0.70
Transmembrane Helix	733	758	0.81
Non-Cytoplasmic	759	765	0.52
Transmembrane Helix	766	787	0.87
Cytoplasmic	788	856	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPCQWNHQT SGFPVKPDGK KGAAFFCFPA ALGDSSRSLN MENRGPEPAR RQQFLADIQE  60
   61 SPLVVSSKEV AGNKMPSHPH TGVSCQECGF SETYWVTAFA DTLSLQHHKR IIRNAFLLEL 120
  121 SLLIKRHRKK KMVSQDWYSE CQQVLQQEAS QTQVEMLGEA PAPAPAPAPA PAPAPQPRLA 180
  181 GAASPRTGGG GGSQSPAPAG KRTMHCLGAE YLVSAEGAPR QREWRPQIYR KCTDTAWLFL 240
  241 FFLFWTGLVF IMGYSVVAGA AGRLLFGYDS FGNMCGKKNS PVEGAPLSGQ DMTLKKHVFF 300
  301 MNSCNLEVKG MQLNRMALCV SNCPEEQLDS LEEVQLFANT SGSFLCVYSL NSFNYTHSPK 360
  361 ADSLCPRLPV PPSKSFPLFN RCVPQTPECY SLFASVLIND VDTLHRILSG IMSGRDTILG 420
  421 LCILALALSL AMMFTFRFIT TLLVHIFISL VILGLLFVCG VLWWLYYDYT NDLSIELDTE 480
  481 RENMKCVLGF AIVSTGITAV LLVLIFVLRK RIKLTVELFQ ITNKAISSAP FLLFQPLWTF 540
  541 AILIFFWVLW VAVLLSLGTA GAAQVMEGGQ VEYKPLSGIR YMWSYHLIGL IWTSEFILAC 600
  601 QQMTIAGAVV TCYFNRSKND PPDHPILSSL SILFFYHQGT VVKGSFLISV VRIPRIIVMY 660
  661 MQNALKEQQH GALSRYLFRC CYCCFWCLDK YLLHLNQNAY TTTAINGTDF CTSAKDAFKI 720
  721 LSKNSSHFTS INCFGDFIIF LGKVLVVCFT VFGGLMAFNY NRAFQVWAVP LLLVAFFAYL 780
  781 VAHSFLSVFE TVLDALFLCF AVDLETNDGS SEKPYFMDQE FLSFVKRSNK LNNARAQQDK 840
  841 HSLRNEEGTE LQAIVR