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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114557343
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSGCRMRS LWFIIVISFL PNTEGFSRAA LPFGLVRREL SCEGYSIDLR CPGSDVIMIE  60
   61 SANYGRTDDK ICDADPFQME NTDCYLPDAF KIMTQRCNNR TQCIVVTGSD VFPDPCPGTY 120
  121 KYLEVQYECV PYIFVCPGTL KAIVDSPCIY EAEQKAGAWC KDPLQAADKI YFMPWTPYRT 180
  181 DTLIEYASLE DFQNSRQTTT YKLPNRVDGT GFVVYDGAVF FNKERTRNIV KFDLRTRIKS 240
  241 GEAIINYANY HDTSPYRWGG KTDIDLAVDE NGLWVIYATE QNNGMIVISQ LNPYTLRFEA 300
  301 TWETVYDKRA ASNAFMICGV LYVVRSVYQD NESETGKNSI DYIYNTRLNR GEYVDVPFPN 360
  361 QYQYIAAVDY NPRDNQLYVW NNNFILRYSL EFGPPDPAQG KRTTPVHSTV TITSSAELFK 420
  421 TTISTTSTTS QKGPMSTTVA GSQEGSKGTK PPPAVSTTKI PPITNIFPLP ERFCEALDSK 480
  481 GIKWPQTQRG MMVERPCPKG TRGTASYLCM ISTGTWNPKG PDLSNCTSHW VNQLAQKIRS 540
  541 GENAASLANE LAKHTKGPVF AGDVSSSVRL MEQLVDILDA QLQELKPSEK DSAGRSYNKL 600
  601 QKREKTCRAY LKAIVDTVDN LLRPEALESW KHMNSSEQAH TATMLLDTLE EGAFVLADNL 660
  661 LEPTRVSMPT ENIVLEVAVL STEGQIQDFK FPLGIKGAGS SIQLSANTVK QNSRNGLAKL 720
  721 VFIIYRSLGQ FLSTENATIK LGADFIGRNS TIAVNSHVIS VSINKESSRV YLTDPVLFTL 780
  781 PHIDPDNYFN ANCSFWNYSE RTMMGYWSTQ GCKLVDTNKT RTTCACSHLT NFAILMAHRE 840
  841 IYKDGVHELL LTVITWVGIV ISLVCLAICI FTFCFFRGLQ SDRNTIHKNL CINLFIAEFI 900
  901 FLIGIDKTKY AIACPIFAGL LHFFFLAAFA WMCLEGVQLY LMLVEVFESE YSRKKYYYVA 960
  961 GYLFPATVVG VSAAIDYKSY GTEKACWLHV DNYFIWSFIG PVTFIILLNI IFLVITLCKM1020
 1021 VKHSNTLKPD SSRLENIKSW VLGAFALLCL LGLTWSFGLL FINEETIVMA YLFTIFNAFQ1080
 1081 GVFIFIFHCA LQKKVRKEYG KCFRHSYCCG GLPTESPHSS VKASTTRTSA RYSSGTQSRI1140
 1141 RRMWNDTVRK QSESSFISGD INSTSTLNQG MTGNYLLTNP LLRPHGTNNP YNTLLAETVV1200
 1201 CNAPSAPVFN SPATYRETRH SLNNARDTSA MDTLPLNGNF NNSYSLRKGD YNDSVQVVDC1260
 1261 GLSLNDTAFE KMIISELVHN NLRGSSKTHN LELTLPVKPV IGGSSSEDDA IVADASSLMH1320
 1321 SDNPGLELHH KELEAPLIPQ RTHSLLYQPQ KKVKSEGTDS YVSQLTTEAE DHLQSPNRDS1380
 1381 LYTSMPNLRD SPYPESSPDM EEELSPSRRS ENEDIYYKSM PNLGAGHQLQ MCYQISRGNS1440
 1441 DGYIIPINKE GCIPEGDVRE GQMQLVTSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle