YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114554372
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWKKLGSRN FSSCPNGSIQ WIWDVLGECA QDGWDEASVG LGLISILCFA ASTFPQFIKA  60
   61 YKTGNMDQAL SLWFLLGWIG GDSCNLIGSF LADQLPLQTY TAVYYVLADL VMLTLYFYYK 120
  121 FRTRPSLLSA PINSVLLFLM GTACATRLLS AAGPVAAPRE AFRGRALLSV ESGSKPFTRQ 180
  181 EVIGFVIGSI SSVLYLLSRL PQIRTNFLRK STQGISYSLF ALVMLGNTLY GLSVLLKNPE 240
  241 EGQSEGSYLL HHLPWLVGSL GVLLLDTIIS IQFLVYRRST AASELEPLLP S

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.72
Transmembrane Helix	37	58	0.81
Cytoplasmic	59	69	0.87
Transmembrane Helix	70	92	0.91
Non-Cytoplasmic	93	99	0.86
Transmembrane Helix	100	119	0.95
Cytoplasmic	120	129	0.83
Transmembrane Helix	130	151	0.86
Non-Cytoplasmic	152	181	0.85
Transmembrane Helix	182	198	0.96
Cytoplasmic	199	213	0.86
Transmembrane Helix	214	234	0.92
Non-Cytoplasmic	235	252	0.87
Transmembrane Helix	253	275	0.90
Cytoplasmic	276	291	0.96