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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114554424
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEWASRFW LWATLLIPAA AVYEDQVGKF DWRQQYVGKV KFASLEFSPG SKKLVVATEK  60
   61 NVIAALNSRT GEILWRHVDK GTAEGAVDAM LLHGQDVITV SNGGRIMRSW ETNIGGLNWE 120
  121 ITLDSGSFQA LGLVGLQESV RYIAVLKKTT LALHHLSSGH LKWVEHLPES DSIHYQMVYS 180
  181 YGSGVVWALG VVPFSHVNIV KFNVEDGEIV QQVRVSTLWL QHLSGACGVV DEAVLVCPDP 240
  241 SSRSLQTLAL ETEWELRQIP LQSLDLEFGS GFQPRVLPTQ PNPVDASRAQ FFLHLSPSHY 300
  301 ALLQYHYGTL SLLKNFPQTA LVSFATTGEK TVAAVMACRN EVQKTSNSED GSMGSFSEKS 360
  361 SSKDSLACFN QTYTINLYLV ETGRRLLDTT ITFSLEQSGT RPERLYIQVF LKKDDSVGYR 420
  421 ALVQTEDHLL LFLQQLGKVV LWSREESLAE VVCLEMVDLP LTGAQAELEG EFGKKADGLL 480
  481 GMFLKRLSSQ LILLQAWTSH LWKMFYDARK PRSQIKNEIN IDTLARDEFN LQKMMVMVTA 540
  541 SGKLFGIESS SGTILWKQYL PNVKPDSSFK LMVQRTTAHF PHPPQCTLLV KDKESGMSSL 600
  601 YVFNPIFGKW SQVAPPVLKR PILQSLLLPV MDQDYAKVLL LIDDEYKVTA FPATRNVLRQ 660
  661 LHELAPSIFF YLVDAEQGRL CGYRLRKDLT TELSWELTIP PEVQRIVKVK GKRSSEHVHS 720
  721 QGRVMGDRSV LYKSLNPNLL AVVTESTDAH HERTFIGIFL IDGVTGRIIH SSVQKKAKGP 780
  781 VHIVHSENWV VYQYWNTKAR RNEFTVLELY EGTEQYNATA FSSLDRPQLP QVLQQSYIFP 840
  841 SSISAMEATI TERGITSRHL LIGLPSGAIL SLPKALLDPR RPEIPTEQSR EENLIPYSPD 900
  901 VQIHAERFIN YNQTVSRMRG IYTAPSGLES TCLVVAYGLD IYQTRVYPSK QFDVLKDDYD 960
  961 YVLISSVLFG LVFATMITKR LAQVKLLNRA WR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle