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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114776656, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIDPVCGMN VKDNSPHRAE YDGHTWHFCS AGCKGKFNAG PDQFTIDPVC GMHVKPESPH  60
   61 RAKHVDHSYR FCSEKCLQKF SDDPSQYINK ERHAVEATTE TGAGRYTCPM HPEIEQDGPG 120
  121 SCPKCGMALE PMGVPVSSGK IEYICPMHPE VVSDEPGSCP KCGMALEART VTLDEENPEL 180
  181 DDMSRRFKVS VLLAVPVFLL AMVADLAPAW LPSGLSMGTV QWIEFALATP VVLWGGWPFF 240
  241 VRGWQSVLTW NLNMFTLIGL GVGVAWVYSM VALLAPGLFP PVMQMEGGLV DVYFEAAAVI 300
  301 TALVLLGQVL ELRARSRTNE AIKLLLGMSP KTARRVGKDG SETDVPLEDV QPGDVLRIRP 360
  361 GEKVPVDGVV TEGESNVDES MVSGEPVPVE KFAGEKLIGA TVNGNGSLLM RAEKVGAETL 420
  421 LAQIVNMVAE AQRSRAPIQK MADTVAGYFV PAVVGVALVA FAVWFFVGPE PRLAHAIINA 480
  481 VAVLIIACPC ALGLATPISI MVGTGRGATA GVLIKNAESL EIVEKVNTVV VDKTGTLTEG 540
  541 RPSLTTVKAV GKLSEDQVLQ MAASLEKASE HPLAEAIVAG AKERKLEPKA VKGFAAVTGK 600
  601 GVSATLGGKA VLLGNAKLMQ DSGIDTATAE AQVEEHQRDG ETVMYLAVGG ELAGLLGVSD 660
  661 PIKASTPDAI KELHDEGIEV VMLTGDNRNT AAAVAKKLGI DRFEADVLPD QKAAVVKKLQ 720
  721 DEGKIVAMAG DGINDAPALA QAHVGIAMGT GTDVAMESAG VTLIKGDLRG IVRAVRLSRS 780
  781 TMRNIRQNLF FAFIYNAAGV PVAAGVLYPV FGLLLSPVIA AAAMSFSSVS VITNALRLRN 840
  841 AKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle