YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114550616
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAAASPPE VIRAAQKDEY YRGGLRSAAG GALHSLAGAR KWLEWRKEVE LLSDVAYFGL  60
   61 TTLAGYQTLG EEYVSIIQVD PSRIHVPSSL RRGVLVTLHA VLPYLLDKAL LPLEQELQAD 120
  121 PDSGRPSQGS LGPGGRGCSG ARRWMRHHTA TLTEQQRRAL LRAVFVLRQG LACLQRLHVA 180
  181 WFYIHGVFYH LAKRLAGITY LRVRSLPGED LRARVSYRLL GVVSLLHLVL SVGLQLYGFR 240
  241 QRQRARKEWR LHRGLSHRRA SLEERAISRN PLCTLCLEER RHPTATPCGH LFCWECITAW 300
  301 CSSKAECPLC REKFPPQKLI YLRHYR

Type	Start	End	Confidence
Cytoplasmic	1	164	0.69
Transmembrane Helix	165	185	0.49
Non-Cytoplasmic	186	216	0.71
Transmembrane Helix	217	239	0.87
Cytoplasmic	240	326	0.72