YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114770949
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	72	0.95
Transmembrane Helix	73	96	0.90
Cytoplasmic	97	116	0.94
Transmembrane Helix	117	141	0.85
Non-Cytoplasmic	142	149	0.83
Transmembrane Helix	150	170	0.95
Cytoplasmic	171	178	0.88
Transmembrane Helix	179	200	0.92
Non-Cytoplasmic	201	210	0.87
Transmembrane Helix	211	232	0.93
Cytoplasmic	233	267	0.92
Transmembrane Helix	268	290	0.87
Non-Cytoplasmic	291	312	0.91
Transmembrane Helix	313	333	0.93
Cytoplasmic	334	368	0.94
Transmembrane Helix	369	388	0.94
Non-Cytoplasmic	389	394	0.76
Transmembrane Helix	395	414	0.92
Cytoplasmic	415	439	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPGVDSGA KNGLSELRSR LFFVLGAIIV FRLGSYVPIP GIDAAVLSQL FEQQKGTIVE  60
   61 MFNMFSGGAL ERASVLALGI MPYITASIII QLLTAVHPPM MELKKEGEAG RRKISQYTRY 120
  121 LTLVLATFQS IGVATGLPNL ISGLVINPGF GFYFTAVVSL VTGTMFLMWL GEQITERGIG 180
  181 NGISILIFAG IVAGLPTAIG QTAEQARQGE INLLFLLLIA AIVIGLTYLV VFVERAQRRI 240
  241 VVNYAKRQQG RKVMQAQSSH LPLKVNMAGV IPPIFASSII LFPSTIAGWF GQNEATSWLQ 300
  301 DVALLLSPGQ PLYVGLYAAA IIFFCFFYTA LTFNPRETAD NLKKSGAFVP GIRPGEQTSR 360
  361 YLDKVMTRLT LAGALYITFV CLVPEFLLLT WNVPFYFGGT SLLIIVVVIM DFMAQVQTHL 420
  421 MSSQYESVLK KANLKGYGR