YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114771677
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQNLENEKE FTDRAYEMDS TLVDNVLSFI ESQNKRGLIA LLNEYHAADI ADLFEQINPN  60
   61 SRSALIELWG KEMDGEVFAE MDEGLSGDLI EEMPDEVVSS VLKDLETDDV VDLVEDLEKD 120
  121 EQSRIIEALD AVDQIAVLNS LKYPEGTAGR LMARELVMAP THWNVGQTID NLRKSKNLPA 180
  181 QFYDVVVVDP MSKPIGKVTL STLLRARRSI PLIELVDDEF RTIPVTQSQE DVAYAFNQYN 240
  241 MVSAPVVDDE NRLVGVITMD DAMEVLGDEA DEDIKLLGGV GDESLTDTIF VTVRQRFPWL 300
  301 GFNLLTSILA SIVIAQFSST IEAIVALAVL MPIVASMGGN AGTQTLTVAV RALATKDLTS 360
  361 ANAWRVIRRE AIVGLLNGLI FAIIIGLIGY YWYGFPMLGA VLAMAMILNL LMAGLAGILV 420
  421 PLLLDKFNLD PALGSSALVT TVTDIVGFFA FLGLAAAILL

Type	Start	End	Confidence
Cytoplasmic	1	298	0.91
Transmembrane Helix	299	318	0.90
Non-Cytoplasmic	319	323	0.66
Transmembrane Helix	324	350	0.77
Cytoplasmic	351	370	0.92
Transmembrane Helix	371	393	0.92
Non-Cytoplasmic	394	399	0.83
Transmembrane Helix	400	424	0.90
Cytoplasmic	425	435	0.84
Transmembrane Helix	436	458	0.91
Non-Cytoplasmic	459	460	0.82