YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114769835
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDTDILVV GGGLIGSAMA IALSSIGFDV TVIDRQSDQL SKSHVFDGRA YALSHASIRM  60
   61 LKALGIWNYI EENAEPILDI KVSDGRAGEG ASDWFLHFDH QELEEGPMGH LIEDRHIREA 120
  121 LKANIKKSKQ IEYIYNTEVI SKSDDDTGVS LNLSDGRILR SRLLIGCDGR NSNIAKWSNI 180
  181 SHIGWDYNQS ALVCAISHEK PHYGIAHQFF TPSGPLAILP LPGNKSSIVW TETKDKAKDI 240
  241 NIMRDEDYLS ALSPVIGNFL GPISLVGDRF SYPLGLSIAE SFISSCTVLV GDSAHGIHPL 300
  301 AGQGLNLGLK DIAALTEVLA LAKRRGENFS SKDVLERYQK WRRFDTSAMA VVTDSINKLF 360
  361 SNDNTVLRSI RDIGLGGVNA TPQLRRSFMR HAAGLSGDLP KLLQGQII

Type	Start	End	Confidence
Cytoplasmic	1	6	0.71
Transmembrane Helix	7	30	0.76
Non-Cytoplasmic	31	408	0.88