YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT5G3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFACAKLACT PSLIRAGSRV AYRPISASVL SRPEASRTGE GSTVFNGAQN GVSQLIQREF  60
   61 QTSAISRDID TAAKFIGAGA ATVGVAGSGA GIGTVFGSLI IGYARNPSLK QQLFSYAILG 120
  121 FALSEAMGLF CLMVAFLILF AM

Type	Start	End	Confidence
Cytoplasmic	1	74	0.86
Transmembrane Helix	75	101	0.82
Non-Cytoplasmic	102	116	0.75
Transmembrane Helix	117	140	0.93
Cytoplasmic	141	142	0.74