YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114539179, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHTEYDHAG HSHSHGFKGH SHGANERRIA IAAVLTGGFM LAEVVGGLIS GSLALLADAG  60
   61 HMLTDFAALA LGWFAFRLSR KPSDQERTYG YDRFEVLVAF VNGLTLFVIA GFITYEAIHR 120
  121 LMSPTEVLGG MMMVIAVAGL VVNILVFTIL HGADRANLNI RGAVLHVLGD LLGSIAAILA 180
  181 AGVIIWTGWT PIDPILSVLV SIIILVSAYR LVRDAGHVLL EGTPQDIDVK TLKTVLVSSV 240
  241 DGLKDVHHIH IWSLTPERPM ATLHACIDEQ ADGPDITRAI KAELKQRFSI EHATVEVEYG 300
  301 SCADEAVHHA QHGHGSRDQK DAETHEVSSD HQPA

Type	Start	End	Confidence
Cytoplasmic	1	28	0.98
Transmembrane Helix	29	50	0.91
Non-Cytoplasmic	51	58	0.63
Transmembrane Helix	59	76	0.95
Cytoplasmic	77	95	0.87
Transmembrane Helix	96	118	0.89
Non-Cytoplasmic	119	127	0.90
Transmembrane Helix	128	151	0.89
Cytoplasmic	152	162	0.89
Transmembrane Helix	163	186	0.90
Non-Cytoplasmic	187	191	0.77
Transmembrane Helix	192	212	0.89
Cytoplasmic	213	334	0.98