YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114539289, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	46	0.88
Non-Cytoplasmic	47	78	0.81
Transmembrane Helix	79	101	0.82
Cytoplasmic	102	122	0.91
Transmembrane Helix	123	143	0.89
Non-Cytoplasmic	144	153	0.79
Transmembrane Helix	154	175	0.94
Cytoplasmic	176	183	0.86
Transmembrane Helix	184	205	0.91
Non-Cytoplasmic	206	214	0.81
Transmembrane Helix	215	238	0.92
Cytoplasmic	239	273	0.92
Transmembrane Helix	274	294	0.86
Non-Cytoplasmic	295	317	0.91
Transmembrane Helix	318	338	0.93
Cytoplasmic	339	368	0.94
Transmembrane Helix	369	393	0.81
Non-Cytoplasmic	394	399	0.57
Transmembrane Helix	400	426	0.68
Cytoplasmic	427	446	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAAEQLAA NLNFSAFSKA EDLKKRIWFT LGALIVYRLG TYIPMPGINP DALAQAFQQQ  60
   61 STGILGLFNM FSGGAVGRMA IFALGIMPYI SASIIIQLMT SVIPSLEQLK KEGEQGRKVI 120
  121 NQYTRYGTVL LSIVQAYGIA AGLQTQANIV VNPGWFFTMS AVITLVGGTM FLMWLGEQIT 180
  181 ARGIGNGISL IIFAGIVANL PSALANLLEL GRTGALSTAV ILIIIVLAVV TIATIVFFER 240
  241 AQRRLLIQYP KRQVGNRMFQ GDTSHLPLKL NTSGVIPPIF ASSLLLLPVT VANFSNTEEL 300
  301 PDWATAVVAS LGHGQPLYML FYAGLIAFFA FFYTAVVFNP KDTADNLKKH GGFIPGIRPG 360
  361 ERTAEYIDFV LTRITVVGAI YLVVVCLLPE FLISAAGVPF YLGGTSLLIV VSVTMDTVAQ 420
  421 VQGHLLAHQY EGLIKKSKLR GGKRGR