YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114537210, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.72
Transmembrane Helix	71	92	0.84
Non-Cytoplasmic	93	97	0.53
Transmembrane Helix	98	120	0.68
Cytoplasmic	121	121	0.22
Transmembrane Helix	122	136	0.58
Non-Cytoplasmic	137	139	0.47
Transmembrane Helix	140	162	0.84
Cytoplasmic	163	167	0.58
Transmembrane Helix	168	190	0.84
Non-Cytoplasmic	191	194	0.52
Transmembrane Helix	195	215	0.86
Cytoplasmic	216	220	0.50
Transmembrane Helix	221	245	0.80
Non-Cytoplasmic	246	316	0.60
Transmembrane Helix	317	336	0.80
Cytoplasmic	337	345	0.75
Transmembrane Helix	346	366	0.88
Non-Cytoplasmic	367	371	0.56
Transmembrane Helix	372	392	0.89
Cytoplasmic	393	402	0.83
Transmembrane Helix	403	434	0.77
Non-Cytoplasmic	435	546	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPHLPRVAM PGAYPPAHPV VAFNGRIASC TSADAGNEQA NCARRSDIRL ELMFSTRNLK  60
   61 AEWLGNIRSD LLSGLVVALA LIPEAIAFSI IAGVDPKVGL YASFSIACLT AIFGGRPGMI 120
  121 SAATAATAVL MITLVADHGL QYLFAATVLA GILQLVAGAL KLGDAMRFVS RSVMTGFVNA 180
  181 LAILIFMAQI PELVGVPYLT YAMVALGLAI IYLLPRVTTA IPSPLVAIVV VTAIALVFGL 240
  241 DLRTVGDMGE LPDSLPIFLI PDIPLNLETL QIILPYSLGI AVVGLLESLM TAQVVDDLTD 300
  301 TPSDKNRECL GQGVANTVTG FFGGMAGCAM IGQSVINVKS GGRTRLSCFF AGIALLFLIV 360
  361 VLGEWVAVIP MAALVAIMIM VSIGTFSWES IVNLKTHPRR SSLVMLVTVV TVVWTHNLAI 420
  421 GVVAGVLLSG IFFASKVAQL FYIESDLSED RRHRTYRVLG QIFFASTSDF GDAFDFREDV 480
  481 DKVTIDVSRS HIWDLSGVGA LDRAVLKFRR EGTEVELVGM NEASRTLVGR LGIADKPDAL 540
  541 ARMEAH